Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g00859 | ATGTCGCACTTCGGAAGATCCGGTCCTCCAGACATCTCCGACACCTACTCTCTACTCGTCCTCAACATCACTTTCCGTACAACCCCCGACGACCTGTTTCCTCTCTTCGACAAATACGGCAAAGTCGTCGACATCTTCGTCCCCAAAGATAGAAGGACTGGCGAATCAAGAGGTTTTGCTTTCGTGCGTTATAAGTATGCTGATGAAGCTTCCAAGGCTGTCGATAGGCTAGACGGAAGAATGGTTGATGGTAGGGAAATAACTGTACAGTTTGCTAAATATGGCCCTAATGCTGAGAGGATTCAGAAAGGAAGGATTATTGAAACATCCCCGAGATCAAAGAGCTCAAGGAGCCGCAGTCCCAGCAGGAGAAGGTACCGTGATGATTACAAAGGCAAGGATTACAGGAGGAGAAGTCGCAGCGGGAGTTATGACAGGTATGAGCGCGACAGATATCGCGGTGGGAGAGACAGAGACTACCGTCGTCGAAGCAGAAGCCGTAGTGCCAGTCCTGATTACAAGGGGCGAGGAAGGGGACGCTATGATGATGAGCGCCGTGGTGCCAGTCCTGATTACAAGGGTCGTGGAAGGGGTAGCTATGATGATGAGCGCCGTGGTAGAAACCGAAGCAGATCAGTAGAAAGCCGATCCCCTGCCCGACGAACTCCTAGTCCAAGAAGGAGCCCTTCTCCTAAGAAGAGTATTTCCCCTCAAAGGAGCACTTCTCCCCAGAAAAGTCCACGCCATGAAAGTCCTGATAATCGTAGCCGCGATGAAAGATCTCTTACTCCTCGTGGTGAGAGTGTCTCACCACGAGGTCGCCCTGATGTTTCTCCAAGCCCATCTCCTCGAAATTCAAATGGTGATGAGTAA | 873 | 0.5086 | MSHFGRSGPPDISDTYSLLVLNITFRTTPDDLFPLFDKYGKVVDIFVPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIETSPRSKSSRSRSPSRRRYRDDYKGKDYRRRSRSGSYDRYERDRYRGGRDRDYRRRSRSRSASPDYKGRGRGRYDDERRGASPDYKGRGRGSYDDERRGRNRSRSVESRSPARRTPSPRRSPSPKKSISPQRSTSPQKSPRHESPDNRSRDERSLTPRGESVSPRGRPDVSPSPSPRNSNGDE | 290 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g00859 | 290 | SMART | rrm2_1 | 17 | 90 | IPR003954 | GO:0003676 | |
Vifa1g00859 | 290 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 18 | 88 | IPR000504 | GO:0003723 | |
Vifa1g00859 | 290 | FunFam | Serine/arginine-rich splicing factor SC35 | 4 | 103 | - | - | |
Vifa1g00859 | 290 | MobiDBLite | consensus disorder prediction | 246 | 265 | - | - | |
Vifa1g00859 | 290 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 16 | 94 | IPR000504 | GO:0003723 | |
Vifa1g00859 | 290 | MobiDBLite | consensus disorder prediction | 217 | 245 | - | - | |
Vifa1g00859 | 290 | Gene3D | - | 4 | 105 | IPR012677 | - | |
Vifa1g00859 | 290 | MobiDBLite | consensus disorder prediction | 100 | 290 | - | - | |
Vifa1g00859 | 290 | MobiDBLite | consensus disorder prediction | 122 | 216 | - | - | |
Vifa1g00859 | 290 | PANTHER | GLYCINE-RICH RNA-BINDING PROTEIN RZ1A | 14 | 248 | - | - | |
Vifa1g00859 | 290 | SUPERFAMILY | RNA-binding domain, RBD | 8 | 102 | IPR035979 | GO:0003676 | |
Vifa1g00859 | 290 | SMART | rrm1_1 | 17 | 90 | IPR000504 | GO:0003723 | |
Vifa1g00859 | 290 | CDD | RRM_SRSF2_SRSF8 | 18 | 90 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g00859 | Vifa-Chr1 | 146018881 | 146021892 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g00859 | 13 | 92 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 35.000 | 4.48e-09 | 54.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g00859 | K12891 | - | gmx:100778928 | 330.487 |