Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00859 ATGTCGCACTTCGGAAGATCCGGTCCTCCAGACATCTCCGACACCTACTCTCTACTCGTCCTCAACATCACTTTCCGTACAACCCCCGACGACCTGTTTCCTCTCTTCGACAAATACGGCAAAGTCGTCGACATCTTCGTCCCCAAAGATAGAAGGACTGGCGAATCAAGAGGTTTTGCTTTCGTGCGTTATAAGTATGCTGATGAAGCTTCCAAGGCTGTCGATAGGCTAGACGGAAGAATGGTTGATGGTAGGGAAATAACTGTACAGTTTGCTAAATATGGCCCTAATGCTGAGAGGATTCAGAAAGGAAGGATTATTGAAACATCCCCGAGATCAAAGAGCTCAAGGAGCCGCAGTCCCAGCAGGAGAAGGTACCGTGATGATTACAAAGGCAAGGATTACAGGAGGAGAAGTCGCAGCGGGAGTTATGACAGGTATGAGCGCGACAGATATCGCGGTGGGAGAGACAGAGACTACCGTCGTCGAAGCAGAAGCCGTAGTGCCAGTCCTGATTACAAGGGGCGAGGAAGGGGACGCTATGATGATGAGCGCCGTGGTGCCAGTCCTGATTACAAGGGTCGTGGAAGGGGTAGCTATGATGATGAGCGCCGTGGTAGAAACCGAAGCAGATCAGTAGAAAGCCGATCCCCTGCCCGACGAACTCCTAGTCCAAGAAGGAGCCCTTCTCCTAAGAAGAGTATTTCCCCTCAAAGGAGCACTTCTCCCCAGAAAAGTCCACGCCATGAAAGTCCTGATAATCGTAGCCGCGATGAAAGATCTCTTACTCCTCGTGGTGAGAGTGTCTCACCACGAGGTCGCCCTGATGTTTCTCCAAGCCCATCTCCTCGAAATTCAAATGGTGATGAGTAA 873 0.5086 MSHFGRSGPPDISDTYSLLVLNITFRTTPDDLFPLFDKYGKVVDIFVPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIETSPRSKSSRSRSPSRRRYRDDYKGKDYRRRSRSGSYDRYERDRYRGGRDRDYRRRSRSRSASPDYKGRGRGRYDDERRGASPDYKGRGRGSYDDERRGRNRSRSVESRSPARRTPSPRRSPSPKKSISPQRSTSPQKSPRHESPDNRSRDERSLTPRGESVSPRGRPDVSPSPSPRNSNGDE 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00859 290 SMART rrm2_1 17 90 IPR003954 GO:0003676
Vifa1g00859 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Vifa1g00859 290 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Vifa1g00859 290 MobiDBLite consensus disorder prediction 246 265 - -
Vifa1g00859 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Vifa1g00859 290 MobiDBLite consensus disorder prediction 217 245 - -
Vifa1g00859 290 Gene3D - 4 105 IPR012677 -
Vifa1g00859 290 MobiDBLite consensus disorder prediction 100 290 - -
Vifa1g00859 290 MobiDBLite consensus disorder prediction 122 216 - -
Vifa1g00859 290 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 248 - -
Vifa1g00859 290 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Vifa1g00859 290 SMART rrm1_1 17 90 IPR000504 GO:0003723
Vifa1g00859 290 CDD RRM_SRSF2_SRSF8 18 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00859 Vifa-Chr1 146018881 146021892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00859 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 4.48e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00859 K12891 - gmx:100778928 330.487