Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00857 ATGGAAAACCCTAGAAACGGTTATTTGAATGATGAAGACGAGGAAGATCCCGGGAGTGTTGACTCAACCGAATCACGATGGGTTTTCCAGGAAGATGAAGATCCGTCTGAGATCGATGAATACGATGCTTCTGATATTCGGCATCAATCTATGTTCGATTCCGAAGATGAAGATAATGCTGATCAGAGGCTTATTCGTACTGGTCCTCAAGTTGATTCGTTTGATGTTGAAGCTCTTGAGGTTCCTGGTGTTCATACGCATCACTACTATGAGGATATGACCATGGGAAAGAAAATTGTGTTGGCTTTTCAAACTCTTGGTGTTGTCTTTGGTGATGTTGGAACAAGTCCATTATATACCTTCAGTGTTATGTTTAGAAAGGCTCCTATTAAAGACAATGAAGATATTATTGGGGCATTATCACTTGTCTTGTACACTTTAATCTTGATTCCTTTGCTCAAGTATGTTTTTGTTGTTCTTTGGGCAAATGACGATGGTGAAGGTGGTACATTTGCATTGTATTCCTTGATTTGTCGTAATGCTAAGGTGAATCTTCTTCCCAATCAGTTGCCGTCAGATGCACGTATATCAGGCTTTAGGCTAAAGGTTCCGTCCCCTGAGCTCGAAAGGTCTTTAAAAATTAAGGAAAGGCTAGAGTCTTCATCGAATCTAAAGAAGATCCTACTATTATTAGTTCTTGCTGGTACTTCTATGGTCATAGCTAATGGGGTTGTTACTCCAGCAATGTCAGTACTATCATCTGTTAATGGCTTGAAAGTTGGGGTAGCTGCCATTAAGCAAGATCAAGTGGTGATGATTTCTGTTGCTTGCCTTGTCGTTTTGTTTAGTGTACAGAAGTATGGAACAAGTAAAGCCGGGCTTGCTGTAGGACCTGCACTATTTTTATGGAATTCAACTAAAGCATGGTATTCTCTCGGGGGCTGTCTTCTGTGTGCAACTGGCTCTGAAGCCATGTTTGCAGATCTTTGCTACTTTTCTGTTCGGGCAGTTCAGCTTACATTTCTGTTTCTTGTTTTGCCGTGCCTACTATTGGGTTATTTGGGTCAAGCTGCATACCTTATGGAACACCATGCTGATGCTGGCGAAGCCTTTTTTACTTCTATTCCAAGCGGTGTATTCTGGCCAACTTTTCTCATTGCTAATATTGCTGCACTAATTGCAAGTCGGACTATGACAACGGCTACATTTTCTTGCATAAAACAGTCAACTGCTCTTGGTTGTTTCCCGCGTCTTAAAATAGTTCACACTTCTCGGAAATTTATGGGTCAAATCTATATTCCTGTCATAAACTGGTTCCTGCTGGCTGTTTCTGTGGTGTTCGTCTGCTCTATATCCAACCTAGATGAGATTGGAAATGCATATGGCATTGCTGAGCTGGGGGTAATGATGATGACCACCATTTTAGTCACTCTTGTTATGCTTCTTATATGGCAGATGCACATCATCGTAGTGCTGAGTTTCCTGGTAGTATTCCTGGGTTTGGAGTTGGTTTTCTTTTCATCCGTTTTATGGGGCATAACTGATGGAAGTTGGATTATATTGGTCTTTGCTGCAATAATGTTTTTTATAATGTTCGTCTGGAACTATGGAAGCAAGCTCAAGTATGAAACTGAAGTCAAGCAAAAGCTATCAATGGATTTAATGCGAGAATTGGGCTGCAATCTTGGGACGATACGAGCTCCTGGAATTGGTCTACTTTATAACGAGTTGGTCAAAGGAATTCCAGGAATTTTTGGGCATTTTCTAACCACACTTCCAGCAATACACTCCATGGTTATATTTGTGAGTATCAAGTTTGTTCCAGTTGCTATGGTGCCTCAAAATGAAAGGTTTCTATTTCGACGAGTTTGCCAGAGAAGCTATCATTTATTTCGTTGTATTGCCAGGTATGGTTACAAAGATGTTCGCAAAGAAAATCACCAAGCTTTTGAACAGCTTTTAATGGAGAGTTTAGAGAAGTTTATACGCCGTGAGGCTCAGGAGAGATCACTTGAAAGTGATGGGGATGAGGATACTGATTTAGATGATGAGTACTCTGGTACTAGAGTTCTCATACATCCGAATGGGAGTGTTTACTCACTCGGTGTTCCTCTCCTAGCTGATTTTAATGAAACCTTCATGCCTACTTTTGAACCTAGCACGTCAAAGGATGCACATCCTTCGTCGCCCAAACCCCCTGCGCTCGATGCAGAGCAGGTTCTAGAAAGAGAGTTATCTTTCATACGCACGGCTAAAGAATCAGGAGTGGTTTATCTTCTTGGTCATGGAGATATAAGGGCAAGGAAAGAGTCATGGTTTATGAAGAAACTAGTTATAAACTATTTTTATGCCTTTCTTAGAAAGAATTGCAGAAGGGGGATCACAAATTTAAGCGTACCACATTCACAACTAATGCAGGTTGGAATGACTTACATGGTTTGA 2442 0.4095 MENPRNGYLNDEDEEDPGSVDSTESRWVFQEDEDPSEIDEYDASDIRHQSMFDSEDEDNADQRLIRTGPQVDSFDVEALEVPGVHTHHYYEDMTMGKKIVLAFQTLGVVFGDVGTSPLYTFSVMFRKAPIKDNEDIIGALSLVLYTLILIPLLKYVFVVLWANDDGEGGTFALYSLICRNAKVNLLPNQLPSDARISGFRLKVPSPELERSLKIKERLESSSNLKKILLLLVLAGTSMVIANGVVTPAMSVLSSVNGLKVGVAAIKQDQVVMISVACLVVLFSVQKYGTSKAGLAVGPALFLWNSTKAWYSLGGCLLCATGSEAMFADLCYFSVRAVQLTFLFLVLPCLLLGYLGQAAYLMEHHADAGEAFFTSIPSGVFWPTFLIANIAALIASRTMTTATFSCIKQSTALGCFPRLKIVHTSRKFMGQIYIPVINWFLLAVSVVFVCSISNLDEIGNAYGIAELGVMMMTTILVTLVMLLIWQMHIIVVLSFLVVFLGLELVFFSSVLWGITDGSWIILVFAAIMFFIMFVWNYGSKLKYETEVKQKLSMDLMRELGCNLGTIRAPGIGLLYNELVKGIPGIFGHFLTTLPAIHSMVIFVSIKFVPVAMVPQNERFLFRRVCQRSYHLFRCIARYGYKDVRKENHQAFEQLLMESLEKFIRREAQERSLESDGDEDTDLDDEYSGTRVLIHPNGSVYSLGVPLLADFNETFMPTFEPSTSKDAHPSSPKPPALDAEQVLERELSFIRTAKESGVVYLLGHGDIRARKESWFMKKLVINYFYAFLRKNCRRGITNLSVPHSQLMQVGMTYMV 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00857 813 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 304 811 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vifa1g00857 813 MobiDBLite consensus disorder prediction 1 47 - -
Vifa1g00857 813 Pfam K+ potassium transporter 305 641 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vifa1g00857 813 Pfam K+ potassium transporter 102 303 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00857 Vifa-Chr1 145547694 145554192 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00857 16 813 Inorganic Solute Cotransporters AT5G09400 72.999 0.0 1193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00857 - - gmx:100803841 1327.77