Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00852 ATGGAGATAAGTCCTTACAGTACTTCCAAGAGAACAACACACTTGAAGAAGTTGATCAACCAAAATAACTATATTGTTCATGAAGCTTCACCCATAGACATGATTCCTACATCATCAATCAATCATCAAACATCTTCAGATAATTCTAGTGAAACATGTCATCACGATCAAGATGGTAAATGGTCGTCCAAACTTCTCAAAGAGTGTGCAATAGCAATATCTAATAGAGATTCATCCAAAATCCACCATCTTCTTTGGATGTTAAATGAGTTATCTTCACCTTATGGTGATATTGATCAAAAACTAGCTTCCTATTTTCTACAAGCTCTTTTCTCCAAGGCAACACAATCTGGTCACAAGTGTTACAAAACTCTCTCTTCAATTGCTTCCAAAAACCACTCTTTTGATTCTGCAAGAAAATTGATACTCAAGTTTCAAGAGGTGAGTCCATGGACAACTTTTGGACATGTTGCATCAAATGGTGCTATTTTGGAAGCTTTAGAAGGAGAGAAAAAGCTTCATATAATTGATATTAGTAACACACTTTGTACTCAATGGCCTACTCTTCTAGAAGCTTTAGCTACAAGAAATGATGAAACACCTCATCTTAAGCTCACAATTGTTGTCACAAGCAAAAACTCTAGTGATGTTGTTATGAAAGAAGTTGGTCAAAGAATGGAGAAATTTGCTAGGTTAATGGGAGTACCTTTTGAATTGAATGTTATTAGTGGTTTGAAACATCTAAGAGAATTAACAAAAGAGAGATTAGGGTTGAAGAAGGATGAAGCAATAGCTTTGAATTGTGTTGGAGCATTGAGAAGAGTTCAAGTAGGAGAAAGAGAAAGCTTGATTAAGTTTTTCAAATCACTTTGTCCTAGAGTTATAACATTTGTTGAGGAAGAAGGTGATTTTGTTAGTGATGATTTTGTTAAATGCTTTGAAGAGTGTCTCAAGTTCTATACACTTTATTTTGAGATGTTGGAGGACAGTTTTCCTTCAACAAGTAATGAAAAGTTGATGTTGGAAAGGGAATGTTCAAGAAGCATTGTTAGGGTTTTGGCTTGTGATAGTGAATTTGATCATGATAATGATGATGAAGAAGGTGGTGATGATTGTGATAAAAGAGAGAGAGCAAAACAATGGTTTCAAAGACTAAAGAATGAATTTTCACCTTTTGGATTTAGTGATGATGTTGTAGATGATGTCAAAGCTTTGCTAAAAAGGTATCAAACTGGTTGGTCACTTGTTGTGCCTCAAGGTGATGATAATATCTCAGGAATTTACTTGACATGGAAGGATGAACCAGTTGTTTGGGCATCAACATGGAAACCCTAG 1335 0.3513 MEISPYSTSKRTTHLKKLINQNNYIVHEASPIDMIPTSSINHQTSSDNSSETCHHDQDGKWSSKLLKECAIAISNRDSSKIHHLLWMLNELSSPYGDIDQKLASYFLQALFSKATQSGHKCYKTLSSIASKNHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALEGEKKLHIIDISNTLCTQWPTLLEALATRNDETPHLKLTIVVTSKNSSDVVMKEVGQRMEKFARLMGVPFELNVISGLKHLRELTKERLGLKKDEAIALNCVGALRRVQVGERESLIKFFKSLCPRVITFVEEEGDFVSDDFVKCFEECLKFYTLYFEMLEDSFPSTSNEKLMLERECSRSIVRVLACDSEFDHDNDDEEGGDDCDKRERAKQWFQRLKNEFSPFGFSDDVVDDVKALLKRYQTGWSLVVPQGDDNISGIYLTWKDEPVVWASTWKP 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00852 444 ProSiteProfiles GRAS family profile. 53 443 IPR005202 -
Vifa1g00852 444 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 62 436 IPR005202 -
Vifa1g00852 444 Pfam GRAS domain family 64 443 IPR005202 -
Vifa1g00852 444 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00852 Vifa-Chr1 144859583 144860917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00852 58 444 GRAS Transcription Factor Family AT4G37650 51.724 3.65e-145 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g00852 GRAS 1.6e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00852 - - lang:109357825 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01242 4 374092806 374094464 Vifa1g00852 1 144859583 144860917 PCT