Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00851 ATGGGTGCATCTTCGGTTGAGGTTGTGTCCTTAGAGGACTATGGTGGATTGACTGCGTTTACAATTAGGGTAGTGTCCTTAGATGACTTTGGTGGAATGGAGTTTTTAGTTGGGGTTGAGTTCTTCTTAGAGTACTCTGCATATTCAGGATATGAAGGAAATACTCCTTCATTTTCACTCCATTTTCAATTGAGCTCGATAAGGAGTTCAAGGATTTACCGACACTATGCGCATATCCTTGAGGGAAGAAGTAATCATGATCCGGTAGAGGGATCGAATGGCAGAGTATTTCCTTCGTATCCTGAATATGTAGAGTACTCTAAGAAAAACTCAACCCCAACTAAAAACTCCATTCCACCAAAGTCATCTAAGGACACTACCCTAATTATAAACGCAGTCAATCCACCAGAGTCCTCTAAGGACACAACCTCAACCGGAGATGCACTCATTCCACCAGAGTCCTCTAAGGACATAGCCATAACCGATTTCCATAATAAAAATTGGAGAGTTACTCATTTCATTCAAAAGGGCAAGGGTAAAAATGGTTTTGGTCTTCGGTCAGGTTGGACTGAATTCACTCGGCAGAAGAAACTAACTTCTGGAGATACTGTAATTTTTCAAAAGACTAAATCTGGGGATATCGTTGTTGACTTCCGGAGGAAGGATAATCCTTCTGCTAAGAAATACATTGTACAAGATTATGGCTTGGATAACATCATTTTATCCTCCGCAATGAGCGTGCATATTGGGGACGAATTCAAAGTTATGTATTTTCCACACTGGACTGAGTTACTTGTACATCCATATGTTTTAACTGAGTCCAAAAGCAAGCTTGCTAGAGGCATGAGAATTAGGAAAGCAAATCCGCAAGATACTGTCCTTATTTTTTTTTTGGTTTTTACACTTGCACTTTGCTTTTTAATTGTTTTTATTTCTGCATATTTTTTTATCCTAAGCGAATCGAGTTTGATCGTAAGCGTAAAGGTTTTGAAATTATTCTTCGAATTTGTGTTGAGCACAGTCAGCGTTTGCAATGAACTGATCTCAGTTGGCGATTGA 1059 0.3928 MGASSVEVVSLEDYGGLTAFTIRVVSLDDFGGMEFLVGVEFFLEYSAYSGYEGNTPSFSLHFQLSSIRSSRIYRHYAHILEGRSNHDPVEGSNGRVFPSYPEYVEYSKKNSTPTKNSIPPKSSKDTTLIINAVNPPESSKDTTSTGDALIPPESSKDIAITDFHNKNWRVTHFIQKGKGKNGFGLRSGWTEFTRQKKLTSGDTVIFQKTKSGDIVVDFRRKDNPSAKKYIVQDYGLDNIILSSAMSVHIGDEFKVMYFPHWTELLVHPYVLTESKSKLARGMRIRKANPQDTVLIFFLVFTLALCFLIVFISAYFFILSESSLIVSVKVLKLFFEFVLSTVSVCNELISVGD 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00851 352 CDD B3_DNA 147 212 IPR003340 GO:0003677
Vifa1g00851 352 Pfam B3 DNA binding domain 150 221 IPR003340 GO:0003677
Vifa1g00851 352 SUPERFAMILY DNA-binding pseudobarrel domain 154 222 IPR015300 -
Vifa1g00851 352 ProSiteProfiles B3 DNA-binding domain profile. 155 222 IPR003340 GO:0003677
Vifa1g00851 352 Gene3D - 133 221 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00851 Vifa-Chr1 144739398 144740952 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00851 155 285 B3 DNA Binding Superfamily AT5G60450 30.147 1.84e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa1g00851 B3 3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00851 - K09287 ppp:112293334 57.7658