Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00848 ATGGATCTTCAACATACTTCGAACATCTTGCATTTCTTTGTTGGACAATTGTGTGGACCAAAAAACAGTTGTCCTCAACATACTTCGAGTTCTCAAGTTACTAAAGTTTTGCAAGAGGATCCCGACATGAACTCCGTGATGTCCCAGTTTTACAGAAATCTTTCATATCTGAGAAGAGAGAGCTATACCTTGAAGAAACAAATTCCTAAAAGGACTGATTCAGATCATGTTGATGGTGATGCTCTATTGCTGAGTGTGTTCCAATTGCTTCAAGAAGAGCCTGAATTACAAACTATATATGATTCATCACCAACTGCAAGGAGAAACCGTAAAGGCACAAGGACTTCAAAGAGTAGTGCACAAAAGAATCTAGAGAAGGAAGTACCTAACCGTAAAGGCGCAAGTACTTCAAAGGCTAATGCACAAAAGGATCAAGACAAGGGAGAAATTATCCGGGTTGTTGCAACATTGTGTTGCCAAGATACAAGAAGTAACTGCAGGCCTTCGGCGTGTATCTTTTTGAAGGATGGTAGGTCACTGTTAGATTGCATGAGGGAAGTAATGCATGATCACAGGGCATCTCTGATGGTGATTGGTTTTGTCCCTCATGCCGTTGCGGGATTTGTGCCCAAAACAAAACTGAAGAGACAAAGGATCAACAATTTCTTACTTGCATTTGCATTCAGTGTGAACATAAATAACCATACCAACACAAACCATTATCATCACCATTCTAAATTCAACCAAAACAAACATTTCCATTCTAATCCAGATAAACATATACTAAATATGAAAAGAACAAAACAAAGTCATCCGCACAACATCGGCCATCTCTCTATGATCCACTATCGCCGGCGACTTCATCACCTTCGACGACAACACCTCGAAGCTACGACGCGGACAACTGAAGCTCCAGCCGCACCCTATCTCCACAGACTTCACGCGTACAGACCGCCTTGCCGTTCAACCAGCTTCGGCCTTCCTCACATCGCGATTGCAACACCGGCCGATCTCGCCGCACGACACCATGAACAACCAGCCAACGCTCTACTCAACATTCTAACATATCTATCACTGTGGTCAGAGCTCAACCGGCTAAACTTCCAGGGTTTCTATACCGTACTTCTAGAGAGGAATGAAGAACAAATCAGTGTGGCAACTATAAGGGTATTTGGAGACAAGATAGCTGAAGTTCCTCTAGTCGGTACCAGATTTCAGTATAGACGACTTGGAATGTGTCGTGTTTTAATGGATGAGCTTGAAAAGAAGCTAAAGCTTCTGAGTGGAGAGACTAGTCTTACCAGCTGTTCCTGGGAACTACACCATAGTTTATACACTGGACTTCCGGAATCGGTTGTAACAAGAGAAATACCATCTTCTAGAGCTTCAGCACTGTAG 1398 0.4292 MDLQHTSNILHFFVGQLCGPKNSCPQHTSSSQVTKVLQEDPDMNSVMSQFYRNLSYLRRESYTLKKQIPKRTDSDHVDGDALLLSVFQLLQEEPELQTIYDSSPTARRNRKGTRTSKSSAQKNLEKEVPNRKGASTSKANAQKDQDKGEIIRVVATLCCQDTRSNCRPSACIFLKDGRSLLDCMREVMHDHRASLMVIGFVPHAVAGFVPKTKLKRQRINNFLLAFAFSVNINNHTNTNHYHHHSKFNQNKHFHSNPDKHILNMKRTKQSHPHNIGHLSMIHYRRRLHHLRRQHLEATTRTTEAPAAPYLHRLHAYRPPCRSTSFGLPHIAIATPADLAARHHEQPANALLNILTYLSLWSELNRLNFQGFYTVLLERNEEQISVATIRVFGDKIAEVPLVGTRFQYRRLGMCRVLMDELEKKLKLLSGETSLTSCSWELHHSLYTGLPESVVTREIPSSRASAL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00848 465 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 347 445 IPR016181 -
Vifa1g00848 465 PANTHER PHD FINGER PROTEIN 12 358 429 IPR042163 GO:0003714|GO:0045892
Vifa1g00848 465 MobiDBLite consensus disorder prediction 98 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00848 Vifa-Chr1 144733100 144738330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00848 357 427 PHD Transcription Factor Family AT5G58610 64.789 2.14e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00848 - - pcin:129318355 114.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00848 1 144733100 144738330 Vifa1g00848 1 144733100 144738330 ECH
Vifa2g01248 2 338115179 338116382 Vifa1g00848 1 144733100 144738330 PCT