Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00843 ATGGCGAACCCATCCGGGACTGGTAACCATCAGGAACAACATGCTCATGTTAACCCTTCCAATTTTAACGGCAATTCGGTTCCCGAGAGTTCTTCAGGGCTTGTCATGAACATGAAGCATAATCCAGGGATTTCTCTTGATTGGACGCCGGAAGAACAAGCTACCCTCGAAGACGGACTCTCAAAATATGCCTCAGAATCTAACATAGTACGCTATGCAAAGATAGCACAACAGCTGAATAACAAGACAGTCCGGGATGTTGCTCTGCGTGTCAGGTGGATGAATAAGAAAGAAAATAGCAAGAGAAGGAAGGATGATCACAACTTGTCCCGAAAAAGTAAAGATAAAAAGGAAAGGGTTTCTGATCCCGCAGCAAAATCGTCTCAATTTTCTGCTCGACCCAATGTTCCTCCATATGCGCCACCAATGATTGCAATGGACAATGATGATGGCATCCCATATGCAGCAATTGGAGGTCCTACTGCTGAGCTATTAGAGCAAAATGCACGGGCCTTGAGCAGAGTCTCTGCAAACCTTTCCTCTCTCCAGATTCAGGACAACATCAATCTTTTGCGCCAAACTAGAGACAACATCATTAGAATAATGAATGAGATGAATGATTCACCCGAGGTGATGAAGCAAATGCCACCTCTTCCTGTGAAGATGAATGAAGAACTGGCCAATTCCATACTTCCAATTCCAAGAACACCTCTCCAGCCTCAGTCATGA 729 0.4472 MANPSGTGNHQEQHAHVNPSNFNGNSVPESSSGLVMNMKHNPGISLDWTPEEQATLEDGLSKYASESNIVRYAKIAQQLNNKTVRDVALRVRWMNKKENSKRRKDDHNLSRKSKDKKERVSDPAAKSSQFSARPNVPPYAPPMIAMDNDDGIPYAAIGGPTAELLEQNARALSRVSANLSSLQIQDNINLLRQTRDNIIRIMNEMNDSPEVMKQMPPLPVKMNEELANSILPIPRTPLQPQS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00843 242 MobiDBLite consensus disorder prediction 95 142 - -
Vifa1g00843 242 MobiDBLite consensus disorder prediction 1 38 - -
Vifa1g00843 242 Gene3D - 48 122 - -
Vifa1g00843 242 PANTHER FINGER CCCH DOMAIN PROTEIN, PUTATIVE (DUF3755)-RELATED 6 237 - -
Vifa1g00843 242 CDD SANT 48 97 IPR001005 -
Vifa1g00843 242 Pfam Protein of unknown function (DUF3755) 181 214 IPR022228 -
Vifa1g00843 242 SMART sant 44 97 IPR001005 -
Vifa1g00843 242 SUPERFAMILY Homeodomain-like 40 101 IPR009057 -
Vifa1g00843 242 MobiDBLite consensus disorder prediction 95 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00843 Vifa-Chr1 143733276 143737151 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa1g00843 DUF3755 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00843 - - cam:101498979 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00843 1 143733276 143737151 Vifa6g00886 6 304575387 304578316 PCT