Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00840 ATGGGGAGACTTATGTATGTTGATTTCCCACTAATAATATCTTTTGCAGTATTGAGTCTGTTTCAAGGAGTGGCAGCAGCAGCATCTCCACATCCAAAGTTGCAGTGGCATTACTATGAGTTCAACACTACATGCCGCTATGCAGAGGAGTATGTCCGGCACCAAGTGCAGCTGATATATGATTATGACAAAAGCATTACTGCTAAGTTACTACGCTTGGTTTACTCCGACTGTTTCATCACTGGCTGTGATGCATCAATACTGCTTGATGAAGGACCAAATCCTGAAAAAAAAGCACCACAGAACCGGGGGCTTGGAGGTTTTGTATTAATTGACAAGATCAAAACTGTTCTGGAATCACGATGCCCTGGGGTTGTCTCCTGCGCTGATATACTCCATCTCGCTGCCAGAGATGCTGCTAAAATGGCAGGTGCACCAGGTTATCCAGTTTTCACAGGAAGAAAGGATGGCATGAAATCAGATGCTGCATCAGTAGACCTGCCATCACCATCCATCTCATGGCAAGATGCTCTAACATACTTCAAATCAAGGGCCTTGGATGTATTAGATATGACAACACTCTTAGGGGCGCACACAGTGGGCCAAACACGTTGTAGCCACATTCTTGATAGGCTGTATAATCACAGTGGTACTGGAAACTCAGACCCAAGCATGGATGCTACTGTTCGAGACAATATGCAAAAACTTTGTCCCCCAAAAACAAAAAAAGGACAACATGACCCACTGGTATTCCTAAACCCAGAATCTGGTTCAGATTATTCCTTCAGAGAATCATACTACAAAAGGATCCTACGCAATGAAGCTGTCCTGGAAATCGATCAACAATTACTAAATGGTGACGATACTAAAGAGATCACTGAAGAATTTGCTGATGGATTTGAAGATTTCAGGAGAACTTTTGCAGTATCCATGTACAAAATGGGAAATATCAATATTTTAACAGGAAATCAAGGACAGATACGCCAAAATTGTCGATTCACAAATAAGGGAAACCCAAATTAG 1023 0.4223 MGRLMYVDFPLIISFAVLSLFQGVAAAASPHPKLQWHYYEFNTTCRYAEEYVRHQVQLIYDYDKSITAKLLRLVYSDCFITGCDASILLDEGPNPEKKAPQNRGLGGFVLIDKIKTVLESRCPGVVSCADILHLAARDAAKMAGAPGYPVFTGRKDGMKSDAASVDLPSPSISWQDALTYFKSRALDVLDMTTLLGAHTVGQTRCSHILDRLYNHSGTGNSDPSMDATVRDNMQKLCPPKTKKGQHDPLVFLNPESGSDYSFRESYYKRILRNEAVLEIDQQLLNGDDTKEITEEFADGFEDFRRTFAVSMYKMGNINILTGNQGQIRQNCRFTNKGNPN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00840 340 Gene3D Peroxidase, domain 2 168 314 - -
Vifa1g00840 340 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g00840 340 PRINTS Plant peroxidase signature 309 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g00840 340 PRINTS Plant peroxidase signature 69 89 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g00840 340 PRINTS Plant peroxidase signature 269 286 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g00840 340 PRINTS Plant peroxidase signature 253 268 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g00840 340 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g00840 340 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g00840 340 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g00840 340 FunFam Peroxidase 168 314 - -
Vifa1g00840 340 SUPERFAMILY Heme-dependent peroxidases 37 335 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vifa1g00840 340 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g00840 340 PRINTS Haem peroxidase superfamily signature 255 270 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g00840 340 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g00840 340 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g00840 340 PRINTS Haem peroxidase superfamily signature 67 81 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g00840 340 PANTHER PEROXIDASE 25-RELATED 20 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g00840 340 Gene3D - 41 335 - -
Vifa1g00840 340 Pfam Peroxidase 52 298 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g00840 340 CDD secretory_peroxidase 33 334 IPR033905 GO:0004601|GO:0042744
Vifa1g00840 340 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Vifa1g00840 340 ProSiteProfiles Plant heme peroxidase family profile. 33 335 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00840 Vifa-Chr1 143004654 143006243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00840 9 335 Peroxidase AT2G43480 62.424 3.10e-158 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00840 K00430 - gmx:100797875 493.812