Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00836 ATGGAGTACCCTTTTTATTCTAAGGGAAGAGGATTTGGGTATTGGCAGTCTCCGGGAACTGAGTTGGAAGGATCAATGTCGTTAGATGGTGGAATCAGCACTTTGGTGTCAGAGGATATGCCTAGTAATTTCTCCGAGCTCATGAACTTTGATAATTATGCTGGTTTGTATTCTGGTCCGTCTATGACTGATCAGATTATGGCTAATGAGATTCCGTCTTTTTCCTCGGTGTTATATCAATCACTGGATGGATTCAATCCTGTTGAACAGAACTACGGGCAAATCTGTACGACAGGAGTAAGTGGAAATTACAATAATTCGGATAGCTCCCCCGTTTTTGCGGAGAGAGTTGTGCGTCAGAAAATGGACACCTTACGTGGTTTCTTAGACAACACCGATGATGCAAATAACTTAAATTCTAAGCAAAAAATCTATGATTCTACGCAGCATGTTAATACTTTGTCACTTGATGAAAAAATGCTGAAAGCCTTGTCGTTTTTTAAAGAATCAGCTGGGTATCGTGAAGTGTCAAGGACATTTATATTTTCTACAGAAGGAAAACCTGGCTGTTTACCGGGACTTCCTGGTCGTGTTTTTATCTCCAAAGTTCCTGAATGGACTTCCAATGTTGGTTATTACAATCCAAGTGAGTACTTGAGGGTTGAGCAGGCAAGAAATCACGATGTTCGTGGATCAATTGCTTTTCCCATATTTGATCTGCACTCTGGAATGCCATGTTGTGCTGTCTTGGAACTTGTCACTACGAAGGAAAAGCTTGATTTTGACAAAGAACTGGAAATTATCTGTCGTTCACTTCAGCTTGTAAATTTGAGGACTACTTTGCCTATTCGGCTGCTTCCCGAGTGTCTTTCGACCAATAAAAGAGCTGCTTTAACAGAGATAATTGACGTGTTACGATCCGTGTGTCATGCACATAGATTGCCAATGGCACTAACATGGATTCCTTGTTTTCACACTGAGGGCACAAGAGAAGAAACTACTAGATTACAAATTAAAGAGGGTAATTCAAGTTCTAAAGAAAAAAGCATACTGTGTATTGAAGAGTCAGCTTGCTATATGACTGATAGAGTGATGGAAGGATTTGTGCGTGCATGCATCCAACATCCTCTTGAGGAAGGGAAAGGTGTAGCTGGGAAAGCTCTTCAATCAAATCACCCTTACTTCTATTCTGACGTGAAAACGTATGATATTAGTGAGTATCCACTTGTTCATCATGCACGGAAGTTCAATTTGAACGCAGCAGTTGCAATCAGGCTAAGGAGTATTTATACTAATGACGATGATTACATATTGGAATTCTTTCTGCCAATCAATATGAAAGGGAGTTCAGAACAGCAACTTTTATTAGACAACCTCTCAGGTACCATGCAGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGGTGTTGAACTATCAGGGATAGAATGTAAACATGCGGGGTTTGGAAAAAAAAGAGTCCCGAGTTTCCCCCCCTCGTCCACGAAAAGTTCTCAGATACCATTAATAAATGAAAACCTTAGCTCTGTCCCGAAGCTGTCATCGGAGGCTTCGGACCTGAGAAACAATAGAAAAGAGCCTTCTTGTAACCAGGAAAATAAAGGATCAAGAAGGCGAGCTGAGAAAAGTAGAGCCACATCAGAGAAGAAAGTTAGCTTGAGGGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGTGTTTGCCCGACAACTCTTAAAAGGATATGCAGGCATCACGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCTTTGAAGAAAATTCAGACTGTGCTTGACTCTGTTCAGGGAGTTGAAGGCGGGCTAAAGTTTGATCCCTCCATGGGGGCTTTTGTGGCAGGAGGGACAATCATCCAAGAAATTGATGAAAGTAAAAATCTCCTTTTCCCGGAGAAAAGTACTACACAAGACTCCGAGCCTATTTCAGAAGAAGCTGCCTCAGTGCCTCCCGCACCTTGTAGTGAAGGTGAGAATTCGGCAGATAAGTTGGATAGAAAATTGAAGGGAACCAACGCTTCTATGATTGATTGCAGTGAAGATTCAAAATCATTTGCAATGGATGATTTTCCCGAACAAGCTTGTTTTAGTTCTGTTCCTGCAAAAGGTAATGCTATTGGCCAGAGAAGCTCCTTTGTTGCTGAAGACATGGACAGTGATGCTGATGGGGATGATGAAGTTGTTGAACGCAACAATCCTACTTCTTCAAGCTTGACAGACTCATCTAGTGGCTCGGGTTCAATCATGCATGAGAGTTCATCTAGTTACCAGAACTTTAAGAACCAAAAGCAGTCCAAAGCCAAATCAACCGTTGTTGATAGCGGGACAAAAATCATTGTGAAAGCTACATACGGAGAAGACACCGTTCGCTTTAAATTTGATCCATCCACAGGTTGTTTTAAACTATATGAAGAAGTTGCAGCAAGATTCAAACTGCAATACGGGACATTCCAGCTCAAATATCTAGATGATGAAGAAGAATGGGTGATGTTAGTGAATGACTCAGATTTGCAAGAGTGTTTAGAAATATTGAATGATATGGGGACACGGAATGCAAGGTTTCTTGTTCGTGATATGCCTTGCGTTTTAGGCAGCTCCGGCAGTAACAGTTGCTACTTGGTAGGCAGTTCATAG 2700 0.4133 MEYPFYSKGRGFGYWQSPGTELEGSMSLDGGISTLVSEDMPSNFSELMNFDNYAGLYSGPSMTDQIMANEIPSFSSVLYQSLDGFNPVEQNYGQICTTGVSGNYNNSDSSPVFAERVVRQKMDTLRGFLDNTDDANNLNSKQKIYDSTQHVNTLSLDEKMLKALSFFKESAGYREVSRTFIFSTEGKPGCLPGLPGRVFISKVPEWTSNVGYYNPSEYLRVEQARNHDVRGSIAFPIFDLHSGMPCCAVLELVTTKEKLDFDKELEIICRSLQLVNLRTTLPIRLLPECLSTNKRAALTEIIDVLRSVCHAHRLPMALTWIPCFHTEGTREETTRLQIKEGNSSSKEKSILCIEESACYMTDRVMEGFVRACIQHPLEEGKGVAGKALQSNHPYFYSDVKTYDISEYPLVHHARKFNLNAAVAIRLRSIYTNDDDYILEFFLPINMKGSSEQQLLLDNLSGTMQRICKSLRTVSGVELSGIECKHAGFGKKRVPSFPPSSTKSSQIPLINENLSSVPKLSSEASDLRNNRKEPSCNQENKGSRRRAEKSRATSEKKVSLRVLQQYFSGSLKDAAKSIGVCPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSMGAFVAGGTIIQEIDESKNLLFPEKSTTQDSEPISEEAASVPPAPCSEGENSADKLDRKLKGTNASMIDCSEDSKSFAMDDFPEQACFSSVPAKGNAIGQRSSFVAEDMDSDADGDDEVVERNNPTSSSLTDSSSGSGSIMHESSSSYQNFKNQKQSKAKSTVVDSGTKIIVKATYGEDTVRFKFDPSTGCFKLYEEVAARFKLQYGTFQLKYLDDEEEWVMLVNDSDLQECLEILNDMGTRNARFLVRDMPCVLGSSGSNSCYLVGSS 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00836 899 MobiDBLite consensus disorder prediction 655 683 - -
Vifa1g00836 899 Gene3D - 795 880 - -
Vifa1g00836 899 SMART PB1_new 799 881 IPR000270 GO:0005515
Vifa1g00836 899 Pfam RWP-RK domain 557 604 IPR003035 -
Vifa1g00836 899 SUPERFAMILY CAD & PB1 domains 792 883 - -
Vifa1g00836 899 Pfam PB1 domain 802 879 IPR000270 GO:0005515
Vifa1g00836 899 ProSiteProfiles RWP-RK domain profile. 536 624 IPR003035 -
Vifa1g00836 899 MobiDBLite consensus disorder prediction 524 553 - -
Vifa1g00836 899 PANTHER PROTEIN NLP8 147 891 IPR045012 GO:0003700
Vifa1g00836 899 CDD PB1_NLP 800 880 IPR034891 -
Vifa1g00836 899 MobiDBLite consensus disorder prediction 738 783 - -
Vifa1g00836 899 ProSiteProfiles PB1 domain profile. 799 873 IPR000270 GO:0005515
Vifa1g00836 899 MobiDBLite consensus disorder prediction 517 553 - -
Vifa1g00836 899 MobiDBLite consensus disorder prediction 752 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00836 Vifa-Chr1 142035133 142040616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00836 1 895 NLP Transcription Factor Family AT2G43500 46.138 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vifa1g00836 PB1 2.1e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00836 - - gmx:100804426 1209.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00836 1 142035133 142040616 Vifa1g00836 1 142035133 142040616 ECH