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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Vifa1g00836
ATGGAGTACCCTTTTTATTCTAAGGGAAGAGGATTTGGGTATTGGCAGTCTCCGGGAACTGAGTTGGAAGGATCAATGTCGTTAGATGGTGGAATCAGCACTTTGGTGTCAGAGGATATGCCTAGTAATTTCTCCGAGCTCATGAACTTTGATAATTATGCTGGTTTGTATTCTGGTCCGTCTATGACTGATCAGATTATGGCTAATGAGATTCCGTCTTTTTCCTCGGTGTTATATCAATCACTGGATGGATTCAATCCTGTTGAACAGAACTACGGGCAAATCTGTACGACAGGAGTAAGTGGAAATTACAATAATTCGGATAGCTCCCCCGTTTTTGCGGAGAGAGTTGTGCGTCAGAAAATGGACACCTTACGTGGTTTCTTAGACAACACCGATGATGCAAATAACTTAAATTCTAAGCAAAAAATCTATGATTCTACGCAGCATGTTAATACTTTGTCACTTGATGAAAAAATGCTGAAAGCCTTGTCGTTTTTTAAAGAATCAGCTGGGTATCGTGAAGTGTCAAGGACATTTATATTTTCTACAGAAGGAAAACCTGGCTGTTTACCGGGACTTCCTGGTCGTGTTTTTATCTCCAAAGTTCCTGAATGGACTTCCAATGTTGGTTATTACAATCCAAGTGAGTACTTGAGGGTTGAGCAGGCAAGAAATCACGATGTTCGTGGATCAATTGCTTTTCCCATATTTGATCTGCACTCTGGAATGCCATGTTGTGCTGTCTTGGAACTTGTCACTACGAAGGAAAAGCTTGATTTTGACAAAGAACTGGAAATTATCTGTCGTTCACTTCAGCTTGTAAATTTGAGGACTACTTTGCCTATTCGGCTGCTTCCCGAGTGTCTTTCGACCAATAAAAGAGCTGCTTTAACAGAGATAATTGACGTGTTACGATCCGTGTGTCATGCACATAGATTGCCAATGGCACTAACATGGATTCCTTGTTTTCACACTGAGGGCACAAGAGAAGAAACTACTAGATTACAAATTAAAGAGGGTAATTCAAGTTCTAAAGAAAAAAGCATACTGTGTATTGAAGAGTCAGCTTGCTATATGACTGATAGAGTGATGGAAGGATTTGTGCGTGCATGCATCCAACATCCTCTTGAGGAAGGGAAAGGTGTAGCTGGGAAAGCTCTTCAATCAAATCACCCTTACTTCTATTCTGACGTGAAAACGTATGATATTAGTGAGTATCCACTTGTTCATCATGCACGGAAGTTCAATTTGAACGCAGCAGTTGCAATCAGGCTAAGGAGTATTTATACTAATGACGATGATTACATATTGGAATTCTTTCTGCCAATCAATATGAAAGGGAGTTCAGAACAGCAACTTTTATTAGACAACCTCTCAGGTACCATGCAGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGGTGTTGAACTATCAGGGATAGAATGTAAACATGCGGGGTTTGGAAAAAAAAGAGTCCCGAGTTTCCCCCCCTCGTCCACGAAAAGTTCTCAGATACCATTAATAAATGAAAACCTTAGCTCTGTCCCGAAGCTGTCATCGGAGGCTTCGGACCTGAGAAACAATAGAAAAGAGCCTTCTTGTAACCAGGAAAATAAAGGATCAAGAAGGCGAGCTGAGAAAAGTAGAGCCACATCAGAGAAGAAAGTTAGCTTGAGGGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGTGTTTGCCCGACAACTCTTAAAAGGATATGCAGGCATCACGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCTTTGAAGAAAATTCAGACTGTGCTTGACTCTGTTCAGGGAGTTGAAGGCGGGCTAAAGTTTGATCCCTCCATGGGGGCTTTTGTGGCAGGAGGGACAATCATCCAAGAAATTGATGAAAGTAAAAATCTCCTTTTCCCGGAGAAAAGTACTACACAAGACTCCGAGCCTATTTCAGAAGAAGCTGCCTCAGTGCCTCCCGCACCTTGTAGTGAAGGTGAGAATTCGGCAGATAAGTTGGATAGAAAATTGAAGGGAACCAACGCTTCTATGATTGATTGCAGTGAAGATTCAAAATCATTTGCAATGGATGATTTTCCCGAACAAGCTTGTTTTAGTTCTGTTCCTGCAAAAGGTAATGCTATTGGCCAGAGAAGCTCCTTTGTTGCTGAAGACATGGACAGTGATGCTGATGGGGATGATGAAGTTGTTGAACGCAACAATCCTACTTCTTCAAGCTTGACAGACTCATCTAGTGGCTCGGGTTCAATCATGCATGAGAGTTCATCTAGTTACCAGAACTTTAAGAACCAAAAGCAGTCCAAAGCCAAATCAACCGTTGTTGATAGCGGGACAAAAATCATTGTGAAAGCTACATACGGAGAAGACACCGTTCGCTTTAAATTTGATCCATCCACAGGTTGTTTTAAACTATATGAAGAAGTTGCAGCAAGATTCAAACTGCAATACGGGACATTCCAGCTCAAATATCTAGATGATGAAGAAGAATGGGTGATGTTAGTGAATGACTCAGATTTGCAAGAGTGTTTAGAAATATTGAATGATATGGGGACACGGAATGCAAGGTTTCTTGTTCGTGATATGCCTTGCGTTTTAGGCAGCTCCGGCAGTAACAGTTGCTACTTGGTAGGCAGTTCATAG
2700
0.4133
MEYPFYSKGRGFGYWQSPGTELEGSMSLDGGISTLVSEDMPSNFSELMNFDNYAGLYSGPSMTDQIMANEIPSFSSVLYQSLDGFNPVEQNYGQICTTGVSGNYNNSDSSPVFAERVVRQKMDTLRGFLDNTDDANNLNSKQKIYDSTQHVNTLSLDEKMLKALSFFKESAGYREVSRTFIFSTEGKPGCLPGLPGRVFISKVPEWTSNVGYYNPSEYLRVEQARNHDVRGSIAFPIFDLHSGMPCCAVLELVTTKEKLDFDKELEIICRSLQLVNLRTTLPIRLLPECLSTNKRAALTEIIDVLRSVCHAHRLPMALTWIPCFHTEGTREETTRLQIKEGNSSSKEKSILCIEESACYMTDRVMEGFVRACIQHPLEEGKGVAGKALQSNHPYFYSDVKTYDISEYPLVHHARKFNLNAAVAIRLRSIYTNDDDYILEFFLPINMKGSSEQQLLLDNLSGTMQRICKSLRTVSGVELSGIECKHAGFGKKRVPSFPPSSTKSSQIPLINENLSSVPKLSSEASDLRNNRKEPSCNQENKGSRRRAEKSRATSEKKVSLRVLQQYFSGSLKDAAKSIGVCPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSMGAFVAGGTIIQEIDESKNLLFPEKSTTQDSEPISEEAASVPPAPCSEGENSADKLDRKLKGTNASMIDCSEDSKSFAMDDFPEQACFSSVPAKGNAIGQRSSFVAEDMDSDADGDDEVVERNNPTSSSLTDSSSGSGSIMHESSSSYQNFKNQKQSKAKSTVVDSGTKIIVKATYGEDTVRFKFDPSTGCFKLYEEVAARFKLQYGTFQLKYLDDEEEWVMLVNDSDLQECLEILNDMGTRNARFLVRDMPCVLGSSGSNSCYLVGSS
899
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Vifa1g00836
899
MobiDBLite
consensus disorder prediction
655
683
-
-
Vifa1g00836
899
Gene3D
-
795
880
-
-
Vifa1g00836
899
SMART
PB1_new
799
881
IPR000270
GO:0005515
Vifa1g00836
899
Pfam
RWP-RK domain
557
604
IPR003035
-
Vifa1g00836
899
SUPERFAMILY
CAD & PB1 domains
792
883
-
-
Vifa1g00836
899
Pfam
PB1 domain
802
879
IPR000270
GO:0005515
Vifa1g00836
899
ProSiteProfiles
RWP-RK domain profile.
536
624
IPR003035
-
Vifa1g00836
899
MobiDBLite
consensus disorder prediction
524
553
-
-
Vifa1g00836
899
PANTHER
PROTEIN NLP8
147
891
IPR045012
GO:0003700
Vifa1g00836
899
CDD
PB1_NLP
800
880
IPR034891
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Vifa1g00836
Vifa-Chr1
142035133
142040616
Transposed
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Vifa1g00836
1
895
NLP Transcription Factor Family
AT2G43500
46.138
0.0
738
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TF
RWP-RK
Vifa1g00836
PB1
2.1e-16
CL0072
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Vifa1g00836
-
-
gmx:100804426
1209.13
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Event-related genes
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Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Vifa1g00836
1
142035133
142040616
Vifa1g00836
1
142035133
142040616
ECH
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