Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00826 ATGAAGTGTTTATGTGAGAAAGACTCTGCTCTATGTTCTGTTCATTCAACTTCACACCGTGTTTTCGGATGCCCGTCGTGGGGAACTTCTTCTGAACCTGAAATCCATCAAGCATCTATGTCCAAAAGTTTGGGCTTCAAAGTGGATGCTCTGCAACAAAAATGTCCCGACAAGAGTAAGGCGCTGAGTTTTCAATTACATGAACATGATTCATCTTCAACTCAATCGACTGACTCATCAAAATCAGGTCAAATGCCTTTCCACCATAGTTCTTCTACTGGTTCAACATTTAAGAGAACTGAGGGGAACGATATGGGATGTCTCATCGGGTCATCATCTATTGGAAGTCCAAATCTCACCATCCATCCTCCATTAGTGGATCCCAGCCAATCACTTGCGCATATTGCTTTCCCCTTTGCTGATCCATGCTACAGTGGCCTACTTTCTGCTTCATATGGCCATCAGTATAAGCTAATGGAAACTGCTTCAATCCGAGTTCCCCTGCCGTCTGATATGATGGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATACTGAGGCGAAGACAGTGTCGAGCAAAACTTGAAGCACACAACAAACTCATCAAGGATCGTAAACCATATCTTCATGAGTCCCGTCATGTACATGCATTGAAGAGAGCTAGAGGTGCCGGTGGCCGCTTCCTCAATGCTAAAAAGCTCGAAGAATCAAAGCTTGCATCACAAAACCGTAGCCAAAATGTTTCCACCAGCTATACTTGTTTGAATTTGAATGCAAATATGCCGGAGTCTAAAATGCATGACCAGGTTGAAAACTACAGAGATGATGCTTCTGATGTCACCTATGGATCTAATAGGAATGAAATGTTCCAGCAGCAACAAGAGTTAGAATTCAGGTTATGCAGTTACCCTTCTTCTCAGACTGGAAGAAACATGCAGGATTATACAACTGACAAGAGTGTTGGTGCGAACCAACGCCACCGACTATCGGTTTTCATGTGA 1008 0.4315 MKCLCEKDSALCSVHSTSHRVFGCPSWGTSSEPEIHQASMSKSLGFKVDALQQKCPDKSKALSFQLHEHDSSSTQSTDSSKSGQMPFHHSSSTGSTFKRTEGNDMGCLIGSSSIGSPNLTIHPPLVDPSQSLAHIAFPFADPCYSGLLSASYGHQYKLMETASIRVPLPSDMMEEPIYVNSKQYHAILRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLEESKLASQNRSQNVSTSYTCLNLNANMPESKMHDQVENYRDDASDVTYGSNRNEMFQQQQELEFRLCSYPSSQTGRNMQDYTTDKSVGANQRHRLSVFM 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00826 335 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700|GO:0006355
Vifa1g00826 335 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 41 300 IPR001289 GO:0003700|GO:0006355
Vifa1g00826 335 SMART cbf3 172 233 IPR001289 GO:0003700|GO:0006355
Vifa1g00826 335 MobiDBLite consensus disorder prediction 66 99 - -
Vifa1g00826 335 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 175 230 IPR001289 GO:0003700|GO:0006355
Vifa1g00826 335 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700|GO:0006355
Vifa1g00826 335 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700|GO:0006355
Vifa1g00826 335 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677|GO:0016602
Vifa1g00826 335 Gene3D - 173 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00826 Vifa-Chr1 140639769 140641868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00826 14 245 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.387 2.94e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vifa1g00826 CBFB_NFYA 7.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00826 K08064 - gmx:100500765 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00826 1 140639769 140641868 Vifa1g00826 1 140639769 140641868 ECH
Vifa1g00826 1 140639769 140641868 Vifa4g01295 4 388471002 388472508 PCT
Vifa6g01222 6 392070629 392072557 Vifa1g00826 1 140639769 140641868 PCT