Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00825 ATGAAGTGTTTATGTGAGAAAGACTCTGCTCTATGTTCTGTTCATTCAACTTCACACCGTGTTTTCGGATGCCCGTCGTGGGGAACTTCTTCTGAACCTGAAATCCATCAAGCATCTATGTCCAAAAGTTTGGGCTTCAAAGTGGATGCTCTGCAACAAAAATGTCCCGACAAGAGTAAGGCGCTGAGTTTTCAATTACATGAACATGATTCATCTTCAACTCAATCGACTGACTCATCAAAATCAGGTCAAATGCCTTTCCACCATAGTTCTTCTACTGGTTCAACATTTAAGAGAACTGAGGGGAACGATATGGGATGTCTCATCGGGTCATCATCTATTGGAAGTCCAAATCTCACCATCCATCCTCCATTAGTGGATCCCAGCCAATCACTTGCGCATATTGCTTTCCCCTTTGCTGATCCATGCTACAGTGGCCTACTTTCTGCTTCATATGGCCATCAGTATAAGCTTCTTCATGGCCAGCTAATGGAAACTGCTTCAATCCGAGTTCCCCTGCCGTCTGATATGATGGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATACTGAGGCGAAGACAGTGTCGAGCAAAACTTGAAGCACACAACAAACTCATCAAGGATCGTAAACCATATCTTCATGAGTCCCGTCATGTACATGCATTGAAGAGAGCTAGAGGTGCCGGTGGCCGCTTCCTCAATGCTAAAAAGCTCGAAGAATCAAAGCTTGCATCACAAAACCGTAGCCAAAATGTTTCCACCAGCTATACTTGTTTGAATTTGAATGCAAATATGCCGGAGTCTAAAATGCATGACCAGGTTGAAAACTACAGAGATGATGCTTCTGATGTCACCTATGGATCTAATAGGAATGAAATGTTCCAGCAGCAACAAGAGTTAGAATTCAGGTTATGCAGTTACCCTTCTTCTCAGACTGGAAGAAACATGCAGGATTATACAACTGACAAGAGTGTTGGTGCGAACCAACGCCACCGACTATCGGTTTTCATGTGA 1023 0.433 MKCLCEKDSALCSVHSTSHRVFGCPSWGTSSEPEIHQASMSKSLGFKVDALQQKCPDKSKALSFQLHEHDSSSTQSTDSSKSGQMPFHHSSSTGSTFKRTEGNDMGCLIGSSSIGSPNLTIHPPLVDPSQSLAHIAFPFADPCYSGLLSASYGHQYKLLHGQLMETASIRVPLPSDMMEEPIYVNSKQYHAILRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLEESKLASQNRSQNVSTSYTCLNLNANMPESKMHDQVENYRDDASDVTYGSNRNEMFQQQQELEFRLCSYPSSQTGRNMQDYTTDKSVGANQRHRLSVFM 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00825 340 SMART cbf3 177 238 IPR001289 GO:0003700|GO:0006355
Vifa1g00825 340 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 180 235 IPR001289 GO:0003700|GO:0006355
Vifa1g00825 340 PRINTS CCAAT-binding transcription factor subunit B signature 181 203 IPR001289 GO:0003700|GO:0006355
Vifa1g00825 340 PRINTS CCAAT-binding transcription factor subunit B signature 212 235 IPR001289 GO:0003700|GO:0006355
Vifa1g00825 340 ProSiteProfiles NF-YA/HAP2 family profile. 178 238 IPR001289 GO:0003700|GO:0006355
Vifa1g00825 340 MobiDBLite consensus disorder prediction 66 99 - -
Vifa1g00825 340 Gene3D - 178 239 - -
Vifa1g00825 340 ProSitePatterns NF-YA/HAP2 subunit signature. 183 203 IPR018362 GO:0003677|GO:0016602
Vifa1g00825 340 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 41 305 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00825 Vifa-Chr1 140639769 140641868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00825 14 250 CCAAT-HAP2 Transcription Factor Family AT1G17590 41.935 2.28e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vifa1g00825 CBFB_NFYA 8.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00825 K08064 - gmx:100500765 310.457