Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00821 ATGCAAGCAATGGGGTTATCAGTAGCAGTTTCAGTTCCATTTTACCATTCCAGATTATGCATCAATGCCTCTCCTCATCCACCCATTCCCCTCAATTTGAATCATGGCTTTTCCAAATCACTTACATTCAGGGACAGACTAACTCGTGGGAAGAGTAGCTATGTCATTCGTTCCCAAAAGAATCGTGACGATGATGGTGATGTCGATGGATTTTACATGAGGAAAAGCGTTGAGCTTGCCAGAAAGTATTTGGGGTGTACAAGCCCCAATCCTTTAGTTGGATGTGTTATTGTCAAAGATGGTCAAATTGTTGGCCAAGGTTTTCATCCTAAACCTGGTCAACCTCATGCTGAGGTGTTTGCTCTGAGAGATGCTGCTGATTTGGACGAGAATGCAACGACGTATGTCACTTTAGAAACTTGTAATCATTTTGGGAGGACTCCGCCTTGCACTGAAGCTCTCATTAAAGCTAGACTTAAAAAGGTTGTTGTTGGGATGGTGGATCCAAATCCTATCGTGGCTTCCAAAGGGTTAGATAGATTGAGAGGTGCTGGAATTGAAGTTGTTGTTGGTGTTGAGGAAGAATTGTGTAAGGGCCTCAATGAGGGTTATATTCATCACATGTTGACCCAGAAGCCTCTGCTTACTTTGAGGTATTCTCTTTCTGTCAACGGAAACTTGTTGGACTCACTTGGGAATGGAGTAACTCACTCTGGTGGATACTATTCTAGGCTATTACAAGAATATGATGCAGTTATATTATCCTCTTCTTTATTTCGTGAAACTTTATCGGTCGACTCCGTACCTTCATCTCAAGAACCTGGAGCCAATCAACCCATTCGGTTTATAATGCATAGAGATTCTGGTTCTGGTTCTTCAAATCAAATTCCATTTATAATCGATAACGTTACTGATAAAATGATAATCTTTACAGATTGTATAACAACAGCTCCCGAGGAGACTCAACAAGGAATTAAAACTGTATCTGTGGATCAAATAAATCTTGATGTGATCTTGGATTATTGTAATCGTCAAGGATTGTGCAGTGTTCTGTTAGATATGAGAGGGAATTTCAGTGAATATCAAGAGCTTGTTAAAGAGGGTATTAGGAAGAAGTATATCAATAAATTTTCTTGTCAATTTCATCTCTCTTTTTCTTCTCCCTCCCACACCACCACCCTCCAAACCAACAACATCGTCTTCCAGTATTCTCTCAACGCTTATCTAAATTTCATTAGAGGTGATGATGAAGCCATCTCCGAACTCGACCACGAAATCCGCACCAGGATTCTCCGTGAGAAGTCTAACGCTGACAACACCCTTGCTGCCGCTGAACAAAAGGTCTCTGAATTGGAGGCTCAATTGGAGGGATTGAGGTCTGCTCCTTCTCAGAAGGATTTACTCGACAAAGAGAAGGAAATGATTCAAGGCGATGTCATTAAGTTTCACAAGATTATTGACGAGTTTGGGTTGCGGATTGAGTCGAAAGAGAGGGATTTGGTGGAGAAGGAGAAACAGTTGCAGGCTAAGGTCGTGGAGAGCGACAACATATGTCAAGAGAATAAAATGCTAAAGAAGAAGGTGGAGTCACAGCCTTTCAATACCAGGGACGTTGAGAGGATGAAAAGAGAGTTGCAGGCTGCTGAGAGGGATGCTGGAGAGGCTGAACTTGCTAGGAATGATTGGGAGGAAAAGTGTTGGGAGCTTGGCCGTACTCTCGCAAATAACATCAGAGACTTAGAACCTATCACCAGGGATTGTAACCAAGCCCTTAAGAGGTTGAAGATTGGTAATGACATTCAATATGTGTTGAATCCCAAGGGAACCACGCCTGCTGAGATCATGGGCATATGCTGCTGCCGTACAGTGAATCAAAACTATGCAAATATTCTTTTGATGCTTTTACGTCTCCGTCAGACTTGTGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCCTGTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTTTGGAAACAACTGCCACTATATGTTTTGTCTGCAATAGGCCAGAGAATAAGCTTGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTGTGGCAAAGGGAATGTGTTTGTTAAGAACTTAGCGGAATCGATAGATAATGTGGGACTGCATGATTTATTTCAAGAATATGGGAATATTTTGTCTAGCAAAATTGTCATCTCTGAAGATGGGAAGAGCAAAGGGTTTGGTTATATACAGTTTGGTTCAGAGGAGTCTGCAAATGATGCTATCCAGAAAATGAATGGCTCTACTGTGAGAGATAAGCAGATATATGTTGGGAAATTTATCAGAAAAAGTGAGCGCTCTTTGCCTGAACCTGATGCCAAATATACAAACTTGTACGTTAAGAATTTGGACCCAGATATTACCGAAGCACTTCTTAAAGAAAAGTTCTCATCTTTTGGAAAAATTCTTAGCTTGGCTATTGTAAAGGATGAGAAGGGGTTGTCAAAAGGTTTTGGATTTATGAACTATGAAAACCCGGATGATGCAAGACGAGCAACGGAAGCAAGGAATGGATCACAATTTGGTTCAAAGAACCTGTATGTTGCAAGAGCACAAAAAAAGGTTGAACGTGAGAAGATCTTGCATCAGTGGTTTGCAGAAAGATGCATGGAGAAAAACTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATTGATGATAGTGTTAGTGACGAAGAACTAAAGAGTCAGTTTAGTGCTTGTGGCACAATAACTTCTGCAAAAGTTATGCGAGATGACAAAGGAAAAAGCAAAGGCTTTGTGTTTGTCTGTTTCTCTACCCTGGATGAGGCTGTTAAGGCTGTGAACAATTTTCATGGACGCATGTTTCACGGAAAACCACTGTATGTTGCTTTTGCTCAGAGGAAAGATGTTAGGCAAAGCCTATTGCAGCTCCAGCATTCGCACTGGTGTTGTTTATCATCACCCTAA 3033 0.4108 MQAMGLSVAVSVPFYHSRLCINASPHPPIPLNLNHGFSKSLTFRDRLTRGKSSYVIRSQKNRDDDGDVDGFYMRKSVELARKYLGCTSPNPLVGCVIVKDGQIVGQGFHPKPGQPHAEVFALRDAADLDENATTYVTLETCNHFGRTPPCTEALIKARLKKVVVGMVDPNPIVASKGLDRLRGAGIEVVVGVEEELCKGLNEGYIHHMLTQKPLLTLRYSLSVNGNLLDSLGNGVTHSGGYYSRLLQEYDAVILSSSLFRETLSVDSVPSSQEPGANQPIRFIMHRDSGSGSSNQIPFIIDNVTDKMIIFTDCITTAPEETQQGIKTVSVDQINLDVILDYCNRQGLCSVLLDMRGNFSEYQELVKEGIRKKYINKFSCQFHLSFSSPSHTTTLQTNNIVFQYSLNAYLNFIRGDDEAISELDHEIRTRILREKSNADNTLAAAEQKVSELEAQLEGLRSAPSQKDLLDKEKEMIQGDVIKFHKIIDEFGLRIESKERDLVEKEKQLQAKVVESDNICQENKMLKKKVESQPFNTRDVERMKRELQAAERDAGEAELARNDWEEKCWELGRTLANNIRDLEPITRDCNQALKRLKIGNDIQYVLNPKGTTPAEIMGICCCRTVNQNYANILLMLLRLRQTCDHPLLVKEYNSDPVGKDSVEMAKRLPKEMLINLFNSLETTATICFVCNRPENKLGDDETWDRAESALKEALDECGKGNVFVKNLAESIDNVGLHDLFQEYGNILSSKIVISEDGKSKGFGYIQFGSEESANDAIQKMNGSTVRDKQIYVGKFIRKSERSLPEPDAKYTNLYVKNLDPDITEALLKEKFSSFGKILSLAIVKDEKGLSKGFGFMNYENPDDARRATEARNGSQFGSKNLYVARAQKKVEREKILHQWFAERCMEKNLKYKGSNIYVKNIDDSVSDEELKSQFSACGTITSAKVMRDDKGKSKGFVFVCFSTLDEAVKAVNNFHGRMFHGKPLYVAFAQRKDVRQSLLQLQHSHWCCLSSP 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00821 1010 CDD RRM4_I_PABPs 911 989 - -
Vifa1g00821 1010 Gene3D - 689 798 IPR012677 -
Vifa1g00821 1010 Coils Coil 486 513 - -
Vifa1g00821 1010 PANTHER KINETOCHORE PROTEIN NDC80 HOMOLOG 387 617 - -
Vifa1g00821 1010 CDD Riboflavin_deaminase-reductase 73 185 - -
Vifa1g00821 1010 Gene3D Cytidine Deaminase, domain 2 58 207 - -
Vifa1g00821 1010 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 809 886 IPR000504 GO:0003723
Vifa1g00821 1010 Gene3D - 799 901 IPR012677 -
Vifa1g00821 1010 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 914 982 IPR000504 GO:0003723
Vifa1g00821 1010 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 720 788 IPR000504 GO:0003723
Vifa1g00821 1010 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 811 879 IPR000504 GO:0003723
Vifa1g00821 1010 FunFam Polyadenylate-binding protein 719 799 - -
Vifa1g00821 1010 SUPERFAMILY Cytidine deaminase-like 69 208 IPR016193 GO:0003824
Vifa1g00821 1010 Coils Coil 538 565 - -
Vifa1g00821 1010 Coils Coil 427 461 - -
Vifa1g00821 1010 SMART rrm2_1 913 985 IPR003954 GO:0003676
Vifa1g00821 1010 SMART rrm2_1 719 791 IPR003954 GO:0003676
Vifa1g00821 1010 SMART rrm2_1 810 882 IPR003954 GO:0003676
Vifa1g00821 1010 Gene3D - 902 996 IPR012677 -
Vifa1g00821 1010 Gene3D Dihydrofolate Reductase, subunit A 208 364 IPR024072 -
Vifa1g00821 1010 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 72 166 IPR002125 -
Vifa1g00821 1010 NCBIfam bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD 73 369 IPR004794 GO:0008835|GO:0009231
Vifa1g00821 1010 SMART rrm1_1 719 791 IPR000504 GO:0003723
Vifa1g00821 1010 SMART rrm1_1 913 985 IPR000504 GO:0003723
Vifa1g00821 1010 SMART rrm1_1 810 882 IPR000504 GO:0003723
Vifa1g00821 1010 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 67 189 IPR002125 -
Vifa1g00821 1010 FunFam Polyadenylate-binding protein 800 894 - -
Vifa1g00821 1010 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 718 795 IPR000504 GO:0003723
Vifa1g00821 1010 FunFam Riboflavin biosynthesis protein RibD 67 206 - -
Vifa1g00821 1010 SUPERFAMILY RNA-binding domain, RBD 717 799 IPR035979 GO:0003676
Vifa1g00821 1010 SUPERFAMILY RNA-binding domain, RBD 808 993 IPR035979 GO:0003676
Vifa1g00821 1010 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 912 989 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00821 Vifa-Chr1 140363707 140368637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00821 719 902 Eukaryotic Initiation Factors Gene Family AT2G36660 35.714 1.40e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00821 - - gmx:100786393 475.322