Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00819 ATGGCTTCCAACAACAACATTAAAATCCATGAAACTTTAAAAGTTGTTCCTCCATCATTATCAACCCAAACAACAACAACGATTCCTCTCACGTCTCTAGACATATGTTGGCTAAGGTTTCACCCAGTAGAAAGACTTTTCTTCTACACCCTCCCTTCTTCCCAATCATCCCCCTCTTTCTTCTTTCAAATAATTGTTCCAAATCTCAAATCTTCACTCTCTTTAACCCTCCAACATTTTCTCCCTCTAGCTGGTAAAATCATTTGGCCTTTAGATTCTTCTAAACCATTCATCCATTTCAATCCCAATGATGATGATCATGGAGTTTCCTTACTCATTGCAGAATCTGATTTGGATTTCAATCATCTCATTCAAAATTCACCAAAAGAAGTTTCTTTGTCTCGCTCTTTTATACCGGTTTTGGAATCAACCGATCTCTTTGCTTCAATAGTTTCTATTCAAATAACCCTTTTTCCAAAACAAGGTTTTTCCATTGGAATAAGCACACACCATGCTGTTCTAGATGGAAAATCTTCAACCATGTTCATTAAAGCTTGGGCTTATCTATCCAAAAATATCATCGAAACCGAAGAATCCCCGATTTTATTACCAGAGTTAGAACCTTTACTCGATAGAGAAATCATTAAAGATCGAGATGGACTTAGTGATACACTCACTAACAACTGGGTTAACGTTATCTCTAAGATGTTCCCAAATGAAAAAGGAAACGAAAAAAGCTTGAAGATTTTCCCTTTTGAACCAAAACTTGAAGACTATGTTCGAGCTATGTTTGAGCTCAAGCGCGAAGATTTGAATAAGATAAAGGAATCCATGTTATCCAAATGGGAGTTATTCAATACAAAAGAATCAAAGCCGGAGAGCTTATCATCTTTTGTTCTAACTTGTGCTTATTCACTCGTTTGTGTTGCAAAAGCGATTCAAGAAATTCAAAATGAAAAAGAGAAGTTTGCTTTTTTGTTCACAATAGATTGTAGAGCAAGGTTAGAACCACCAATACCAAGTAACTATTTTGGTAATTGTGTTTTGGGACTTTTGGTTAATACACAACCATCGGATTTCATAGATGAAGATGGAGTGTTTTTGGTTGCAAAGTGTATTCATGAGAAAATAAAGATGATAAATGAAAATGATGTTCTTGAAGGAGCTAAGGATGAGCCTAATAAATTTACAAGTGTGATGAATGAAGGATATGAAATAATTGGAGTGGCTGGGTCTAATAGATTTGAAGTTTATGAAAGTGATTTTGGTTGGGGAAGGCCGAAAAAAGTGGAGATAGTGTCGATTGATAGAGGTTTGACAATTGGTTTGGCAGAGAGCAAAGATCGAAGAGGTGGAATTGAAGTTGGAATTGTTCTTGATAAACATGTAATGGATGTTTTTAGCACTTTATTTCATAAAGGAATAAATTTGTAA 1434 0.3529 MASNNNIKIHETLKVVPPSLSTQTTTTIPLTSLDICWLRFHPVERLFFYTLPSSQSSPSFFFQIIVPNLKSSLSLTLQHFLPLAGKIIWPLDSSKPFIHFNPNDDDHGVSLLIAESDLDFNHLIQNSPKEVSLSRSFIPVLESTDLFASIVSIQITLFPKQGFSIGISTHHAVLDGKSSTMFIKAWAYLSKNIIETEESPILLPELEPLLDREIIKDRDGLSDTLTNNWVNVISKMFPNEKGNEKSLKIFPFEPKLEDYVRAMFELKREDLNKIKESMLSKWELFNTKESKPESLSSFVLTCAYSLVCVAKAIQEIQNEKEKFAFLFTIDCRARLEPPIPSNYFGNCVLGLLVNTQPSDFIDEDGVFLVAKCIHEKIKMINENDVLEGAKDEPNKFTSVMNEGYEIIGVAGSNRFEVYESDFGWGRPKKVEIVSIDRGLTIGLAESKDRRGGIEVGIVLDKHVMDVFSTLFHKGINL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00819 477 Pfam Transferase family 14 469 - -
Vifa1g00819 477 SUPERFAMILY CoA-dependent acyltransferases 290 446 - -
Vifa1g00819 477 Gene3D - 256 477 IPR023213 -
Vifa1g00819 477 PANTHER - 7 475 - -
Vifa1g00819 477 Gene3D - 7 240 IPR023213 -
Vifa1g00819 477 FunFam Phenolic glucoside malonyltransferase 1 256 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00819 Vifa-Chr1 139622629 139624062 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00819 19 467 Monolignol Biosynthesis Gene Families AT5G48930 23.789 6.36e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00819 - - tpra:123889238 657.907