Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00817 ATGGTGGGTGACGACGATGCTCGACCTCCCCGCTTTCGATTGCTCGCCGGAGTTTGGACGAGTGGCCGAAGGCGAGTTCGGATGATATCGGGGAGTGGCCGCAACCGCCGATTACTCCTGGTGGTGGTAGAGAATAGTAATCATGATAGTAGGAGTAATGGGGGGCTTGTGAAGAGAGATAAGATTGCTTTTTTCGATAAGGAGTGTTCTAAAGTTGCTGATCATGTTTATCTTGGTGGTGATGCTGTTGCTAAGGATAGGGGTATTTTGAAAAGGAATGGGATTACTCATGTTTTGAATTGTGTAGGTTTTGTGTGTCCGGAGTATTTCAAAGCTGATTTTGTGTATAGAACTTTGTGGTTACAAGATAGTCCTAGTGAGGATATAACTAGTATTTTGTATGACGTGTTTGATTACTTTGAGGATGTTAGGGAAAAGAATGGGAGGGTGTTTGTTCATTGTTGTCAAGGGGTGTCGAGGTCGACTTCTCTTGTTATTGCTTACCTTATGTGGAGGGAAGGGCAGAGTTTCGATGATGCTTTTCAGTTTGTGAAGGCGGCGAGAGGTATTGCTGATCCGAATATGGGTTTCGCTTGTCAATTGTTGCAGTGTCAGAAAAGGGTTCATGCGTTTCCGCTTAGTCCTAGCTCTTTGTTGAGAATGTATAGGATTGCTCCTCACTCACCGTATGATCCTTTGCATCTTGTTCCGAAGATGTTGACTGATCCGTCTTCGTCTGCGCTTGACTCTAGGGGTGCGTTTATAGTGCATATTCCATCTGCAATATATGTTTGGATTGGCAAGAATTGTGAGGCTATCATGGAAAGGGATGCCAGAGGGGCTGCGGGTCAGATTGTCCGGTATGAGAGAGTGCAAGGATCTATTATCATGATTAAGGAAGGTGAGGAACCGCCTTCTTTTTGGGATGCTTTTTCGAAGTTTTTGCCTTTGATGGCCATATCTGGAAGTGGAGTAGAAAGTAGCAAAACAAGTTTTAAAAATTTCCCTGGCGAGAGGAAAGTAGATGCATACAATGTCGATTTCGAATTTTTTGGAAAAGCCATCGTGGGAGGTTTTGTGCCTCCGTTTGCGTCATCAGAGAATGAACATGAAACTCATCTTCCCGCAAGAGAGAGTAGCTGGAGTGTTTTAAGACGGAAAGATTCCTCCGCAAATGTGAAGGAATTTGTCTCAGCCCCTAAATTATCCTTACCGCGGGTTTATTCAGATTCCGTGTTGTGTATTCATGCATCTTCACTTTCATTTCCATCCCCATCAGCGTCGTCAACAACATCATCTTTATCATCATCCTCTTCACCGCCTTTTGTCTCTCCAGATTCCGTTTCTTCTGATTCTAGCAATCACTCAAAGTTTTTGTTAGAATTGTCCCCAGATTCTTCCTCTCTAGTTTTTGCTCCCGTTCCGGTATCTTCATCTTTGTCTAACTTCTCTAATTTGTCCCTCTCGTCAAATTCTACATCTCTAGCAGTGTCTAACTGTACAGATATCTATGATGTCAAATTATCAAATCCATCTTCTCAGTCTGCCTCTTTACCATCAAAAAAATCATCGACTTCCATTGCTGAACGCAGAGGTAGCTTATCAAAGTCTTTGAAGTTGCCTCTAATGAACGATAAGACTCAAGTAATAGATAAGCCATCAACTATTTGTGCTGGTCGGGAACATGGTGTTCTCGGTAACAGCAAATTTAGCTGTGTACAAGATTCAGACAGTATAGACTATTTGTTCGAGTCCACCAATCATCATCATGTCAAAGACAGAGCTGAGCCTTCCGTAGATAGTTTGTCAAGAGAAAATTTGAAGTCTACCGTGTCAAAGGGAGCTAATGAGAGTGGCTCATTGCAATGTACTAGGACACAAACTTTAGCATACCGCTGGCCTAGTTTAGAAAAGATCGAGACATTTGCTTCAAATCATTTGAGTTCTGAGGCTGCTTTTGTCATATTCTCTCCAAGTATACTTACGCAGGCAGGAAATATTTTATATTTATGGGTAGGGAGCTCTTTCAAACTGGACGCTTCTTCACCGGATCGGTTAGATAGTGATAGAGAGTCTGATTTTCTTGGAACTGTTGACTGGAACCGAATTGGCTGTGATCTTCTTGTTCAGTTTAATTTGCCGAAGAATACAGTTACTAAGATTGTTAAAGAGAATGAAGAACCCCAGGAGTTCCTTGCTTTGCTGAGTTCATTGTAG 2217 0.4244 MVGDDDARPPRFRLLAGVWTSGRRRVRMISGSGRNRRLLLVVVENSNHDSRSNGGLVKRDKIAFFDKECSKVADHVYLGGDAVAKDRGILKRNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLTDPSSSALDSRGAFIVHIPSAIYVWIGKNCEAIMERDARGAAGQIVRYERVQGSIIMIKEGEEPPSFWDAFSKFLPLMAISGSGVESSKTSFKNFPGERKVDAYNVDFEFFGKAIVGGFVPPFASSENEHETHLPARESSWSVLRRKDSSANVKEFVSAPKLSLPRVYSDSVLCIHASSLSFPSPSASSTTSSLSSSSSPPFVSPDSVSSDSSNHSKFLLELSPDSSSLVFAPVPVSSSLSNFSNLSLSSNSTSLAVSNCTDIYDVKLSNPSSQSASLPSKKSSTSIAERRGSLSKSLKLPLMNDKTQVIDKPSTICAGREHGVLGNSKFSCVQDSDSIDYLFESTNHHHVKDRAEPSVDSLSRENLKSTVSKGANESGSLQCTRTQTLAYRWPSLEKIETFASNHLSSEAAFVIFSPSILTQAGNILYLWVGSSFKLDASSPDRLDSDRESDFLGTVDWNRIGCDLLVQFNLPKNTVTKIVKENEEPQEFLALLSSL 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00817 738 Pfam Dual specificity phosphatase, catalytic domain 76 206 IPR000340 GO:0008138|GO:0016311
Vifa1g00817 738 ProSitePatterns Tyrosine specific protein phosphatases active site. 152 162 IPR016130 GO:0016311|GO:0016791
Vifa1g00817 738 CDD DSP 69 203 - -
Vifa1g00817 738 ProSiteProfiles Dual specificity protein phosphatase domain profile. 68 210 IPR020422 GO:0006470|GO:0008138
Vifa1g00817 738 SUPERFAMILY Actin depolymerizing proteins 215 318 - -
Vifa1g00817 738 SMART VILL_6 217 314 IPR007122 GO:0051015
Vifa1g00817 738 SMART dsp_5 68 207 IPR020422 GO:0006470|GO:0008138
Vifa1g00817 738 Gene3D Protein tyrosine phosphatase superfamily 49 210 IPR029021 -
Vifa1g00817 738 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 63 209 IPR029021 -
Vifa1g00817 738 MobiDBLite consensus disorder prediction 510 532 - -
Vifa1g00817 738 PANTHER MKPA PROTEIN 43 735 - -
Vifa1g00817 738 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 188 IPR000387 GO:0016311|GO:0016791
Vifa1g00817 738 Gene3D Severin 219 315 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00817 Vifa-Chr1 139282053 139285061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00817 67 210 Protein tyrosine phosphatase (PTP) family AT3G06110 34.028 3.58e-23 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00817 - - vum:124838930 959.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00817 1 139282053 139285061 Vifa1g00817 1 139282053 139285061 ECH