Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00812 ATGGCGCACAGAAAATTTGCATCCTCATCTTTCCCCTCAAACTCCAACCCTTCAAACTCCAATAATGATTCCTCAAAAAATAATCCTAGTATAATTTCTATACATTCGGAGAACCCTTTTTCTATGGTGGGACGCAACAACGAATTCATGGTCTCTAACACCACCACCAACACCATCAATAATGACATATCGGTGATGCCAATGTCATCATCTGCACAACCATCATCTAGTAGGCATGTGGATCTCCCTCAAGATCCACCAGAGGACCTTACTAGATCCTCCTTCAAAAAGCGAATAGGTAGACCATTGGGTTCTAAAAACAAGCCCAAAGAACACATCATTATTGAGGAAGATACACAAAACTTCACAGAACTGGTAGGACTTGAGATCCCAATAGGAGAAGATATCGTAGAGTATATAACCAAATATGCTCAACGACGTCAAGCTAACATAACAGTGTCAAGGGGTTTCGGTCTTATATCTAACGTTACAATTCTTGATCCAGTATCTCGTGATCCATTATTACCCATTGAAGGACCCATACATATGACATCTCTATTTGGAACATATATAAATCCAAATTGTCAATGTTCTCCTACACAATTCATAGCTCATCCATTATGTTCCTCTTTTACCGTATACTTCTCTAGTTCTAATGGATATGTGTTTGGAGGAGTTATTGGTGGAAAAATTACTGCTGCTAGTGTCATTTTTATTAATGCCACTCTTTCTAAGAAAGCTGTGTTCCACAAGGCAGTCTCCGCCAACATAAATGTTTGA 780 0.3897 MAHRKFASSSFPSNSNPSNSNNDSSKNNPSIISIHSENPFSMVGRNNEFMVSNTTTNTINNDISVMPMSSSAQPSSSRHVDLPQDPPEDLTRSSFKKRIGRPLGSKNKPKEHIIIEEDTQNFTELVGLEIPIGEDIVEYITKYAQRRQANITVSRGFGLISNVTILDPVSRDPLLPIEGPIHMTSLFGTYINPNCQCSPTQFIAHPLCSSFTVYFSSSNGYVFGGVIGGKITAASVIFINATLSKKAVFHKAVSANINV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00812 259 Pfam Plants and Prokaryotes Conserved (PCC) domain 128 239 IPR005175 -
Vifa1g00812 259 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 61 250 IPR014476 GO:0003680
Vifa1g00812 259 CDD DUF296 128 239 IPR005175 -
Vifa1g00812 259 ProSiteProfiles PPC domain profile profile. 120 259 IPR005175 -
Vifa1g00812 259 MobiDBLite consensus disorder prediction 60 109 - -
Vifa1g00812 259 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 254 - -
Vifa1g00812 259 Gene3D - 125 258 - -
Vifa1g00812 259 MobiDBLite consensus disorder prediction 1 34 - -
Vifa1g00812 259 MobiDBLite consensus disorder prediction 7 34 - -
Vifa1g00812 259 MobiDBLite consensus disorder prediction 60 80 - -
Vifa1g00812 259 MobiDBLite consensus disorder prediction 82 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00812 Vifa-Chr1 137109624 137110403 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00812 96 251 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 27.848 1.96e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00812 - - psat:127128304 337.421