Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00809 ATGGCTATAATATTGGCTGCATCTTCTGCTGTCTTGGCTCTTCTTTTGGTTACTGCAACAATGGGTTTCTTTATAAGAAAGAATGTAATGAGGAAAAGAAGAGAGAGAAAACAATTTGGGACACTTTTGGATACAGTGAATAAATCCAAGCTAAATGTTCCATATGAAATTCTTGAAAAAGCAACAAATTACTTCAATGATGACAATAAGCTAGGACAAGGAGGATCAGGTTCAGTTTATAAAGGAGTTATGCCAGATGGTAATACTGTGGCTGTTAAAAGGCTTAGTTTTAACTCGACGCAATGGGTGGATCATTTCTTCAATGAGGTTAATTTGATTAGTGGAGTTCATCACAAAAATGATGAGAGAAGAAAGAATACTTACACGTCGGAGTCACTCCGCCAACGCTTCAATCGTGATTCAGAGGGAATGCTTCAAGCTTGA 444 0.3739 MAIILAASSAVLALLLVTATMGFFIRKNVMRKRRERKQFGTLLDTVNKSKLNVPYEILEKATNYFNDDNKLGQGGSGSVYKGVMPDGNTVAVKRLSFNSTQWVDHFFNEVNLISGVHHKNDERRKNTYTSESLRQRFNRDSEGMLQA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00809 147 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 7 120 - -
Vifa1g00809 147 Gene3D Phosphorylase Kinase; domain 1 24 121 - -
Vifa1g00809 147 ProSitePatterns Protein kinases ATP-binding region signature. 71 93 IPR017441 GO:0005524
Vifa1g00809 147 ProSiteProfiles Protein kinase domain profile. 65 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00809 147 SUPERFAMILY Protein kinase-like (PK-like) 43 120 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00809 Vifa-Chr1 136227343 136228071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00809 1 120 Receptor kinase-like Gene Family AT1G70530 60.833 2.85e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g00809 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00809 - - gmx:100787359 194.512