Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00804 ATGGAGATAACCTTCGCATCGCACAGTTACTCCGACCTCCCCTCCGCCTCCGCCGCCATGCCGTCCACCGCCTCCGGTTCATCTCGTCCTATCAGAGTCATCCCTATGCAACACCCGAACGTTGCGTCATCCTCTTCGCTTCCTCCGAATGTCGCGTTTTCACGGTGGACTTCGAAGCTCCGGCATATGACGTGGCTCGAGTGGTTAGAGTTTTTTCTCCCGTGTTCCCGGTGGATTCGCATCTACAAATGGCGCGAGTATTTTCAGTTGGATCTTATGGCCGGTATCACCGTCGGAGTTATGCTCGTTCCTCAGTCGATGTCATATGCAAAATTGGCTGGACTTCAACCAATATATGGACTCTACTCTGGTTTTGTGCCCATATTTATGTATGCCATATTTGGGTCTTCTCGCCAGCTTGCAGTCGGCCCGGTAGCATTGGTTTCTCTATTGGTCTCTAATGTTCTTGGTAGCGTAGCTGATACGTCCAGTGAATTATACACAGAGTTGGCAATTTTATTGGCCCTTATGGTTGGGGTACTGGAGTGCGTAATGGGACTATTGAGGCTTGGGTGGCTGATCCGTTTCATTAGCCATTCTGTAATATCTGGCTTTACAAGTGCTTCAGCTATTGTGATTGGTTTATCTCAAGCAAAGTACTTTTTGGGGTATGATATAGACAGAAGTAGCAAGATTATACCGTTGGTTAAAAGTATAATAGCTGGAGCTGATAAGTTTTCATGGCCCCCTTTTGTAATGGGATCAGTTATGCTGGCAATACTTCTTGTCATGAAACATCTGGGAAAATCGAGGAAATACTTGCGATTCTTGAGGGCTGCAGGTCCTCTTACGGCAGTGGTTCTGGGAACGGTTTTTGTAAAAATATTTCACCCACCATCAATTTCTTTGGTGGGAGAGATACCGCAGGGCCTCCCCAAATTTTCTATTCCGAGAGCTTTTGAGTATGCAGAGTCCTTAATTCCAACTGCTTTTCTAATAACTGGTGTGGCTATACTGGAATCTGTAGGAATTGCTAAGGCATTAGCTGCAAAGAATGGGTATGAGCTGGATTCAAATCAAGAGTTATTCGGTCTTGGTGTTTCCAATGTTCTCGGCTCATTCTTTTCAGCATACCCCACCACAGGATCCTTTTCAAGATCAGCTGTTAATCATGAAAGTGGTGCAAAATCTGGAGTATCTGGAATAGTTTCGGGGATCATAATTACATGTGCACTTTTGTTTCTAACGCCACTATTTGAGAGCATACCTCAGTCTGCTCTTGCTGCCATCGTGATCTCTGCTGTGATTGGTCTGGTAGATTATGATGAAGCCATTTTTTTGTGGCGTGTAGATAAAAAAGATTTTCTTCTTTGGACCATTACTAGCACTATGACATTGTTCCTTGGTATTGAGATTGGCGTACTTGTTGGGGTTGGAGTGTCACTTGCTTTTGTCATTCACGAGTCAGCCAATCCTCACATTGCTGTTTTGGGTCGTTTGCCAGGGACAACGGTTTATAGAAATGTTAAACAGTATCCTGAAGCATATACATACAATGGAATTGTAATTGTTCGTATTGATGCGCCTATTTATTTTGCAAATATCAGTTACATAAAGGACAGGTTGCGGGAATATGAAGTTGTCGTTGACAGCACTACAAGACGTGGACCCGAGGTAGAAAGAATCAGTTATGTGATTCTAGAGATGGCGCCTGTGACCTACGTAGACTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATCAAGAGTACAAATTACGGGACATTCAGATTGCAATATCAAATCCAAACCCAGATATTCTGCTTACTTTGTCTAAATCCGGTCTGGTGGATTTGATAGGCAAAGAATGGTACTTTGTGAGAGTACACGATGCTGTTCAAGTTTGCTTGCAGCATGTTCAAAACTTGAAACCAGGATATGAAAGTTCACAATCATCACGTTCTTCTTCATCAGAAGACAAACCAAGCATGTTCTCACAATTGTTTAAACAGAGAGATAGTCGTACAACTACCGACTTAGAGTCTGGTAATGGAAGGCCTCCACTTGCCCCGATCAGAGATTCCCAATCGGAGCCGTTGTTGCCAAAAGAACGTTAA 2115 0.4378 MEITFASHSYSDLPSASAAMPSTASGSSRPIRVIPMQHPNVASSSSLPPNVAFSRWTSKLRHMTWLEWLEFFLPCSRWIRIYKWREYFQLDLMAGITVGVMLVPQSMSYAKLAGLQPIYGLYSGFVPIFMYAIFGSSRQLAVGPVALVSLLVSNVLGSVADTSSELYTELAILLALMVGVLECVMGLLRLGWLIRFISHSVISGFTSASAIVIGLSQAKYFLGYDIDRSSKIIPLVKSIIAGADKFSWPPFVMGSVMLAILLVMKHLGKSRKYLRFLRAAGPLTAVVLGTVFVKIFHPPSISLVGEIPQGLPKFSIPRAFEYAESLIPTAFLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVSNVLGSFFSAYPTTGSFSRSAVNHESGAKSGVSGIVSGIIITCALLFLTPLFESIPQSALAAIVISAVIGLVDYDEAIFLWRVDKKDFLLWTITSTMTLFLGIEIGVLVGVGVSLAFVIHESANPHIAVLGRLPGTTVYRNVKQYPEAYTYNGIVIVRIDAPIYFANISYIKDRLREYEVVVDSTTRRGPEVERISYVILEMAPVTYVDSSAVQALKDLYQEYKLRDIQIAISNPNPDILLTLSKSGLVDLIGKEWYFVRVHDAVQVCLQHVQNLKPGYESSQSSRSSSSEDKPSMFSQLFKQRDSRTTTDLESGNGRPPLAPIRDSQSEPLLPKER 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00804 704 FunFam Sulfate transporter 31 491 638 - -
Vifa1g00804 704 PANTHER SULFATE TRANSPORTER 53 646 IPR001902 GO:0016020|GO:0055085
Vifa1g00804 704 SUPERFAMILY SpoIIaa-like 513 635 IPR036513 -
Vifa1g00804 704 Pfam Sulfate permease family 88 461 IPR011547 GO:0016020
Vifa1g00804 704 MobiDBLite consensus disorder prediction 645 704 - -
Vifa1g00804 704 MobiDBLite consensus disorder prediction 645 672 - -
Vifa1g00804 704 ProSitePatterns SLC26A transporters signature. 117 138 IPR018045 GO:0008271|GO:0008272
Vifa1g00804 704 MobiDBLite consensus disorder prediction 1 24 - -
Vifa1g00804 704 NCBIfam sulfate permease 74 631 IPR001902 GO:0016020|GO:0055085
Vifa1g00804 704 ProSiteProfiles STAS domain profile. 511 635 IPR002645 -
Vifa1g00804 704 Gene3D STAS domain 491 639 IPR036513 -
Vifa1g00804 704 CDD STAS_SulP_like_sulfate_transporter 512 628 - -
Vifa1g00804 704 Pfam STAS domain 512 631 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00804 Vifa-Chr1 135250693 135259654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00804 26 668 Inorganic Solute Cotransporters AT5G13550 75.077 0.0 987
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00804 K18059 - gmx:100794754 1144.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00804 1 135250693 135259654 Vifa1g00804 1 135250693 135259654 ECH