Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00791 ATGGAGTCGAAATACGAAGGGTCGAGCGTGATTTTGAAATTGATGGGACTTGATAAAGTGGCTTCCCGATATGAAACTGTTAGAGATAGACCGAAAGTTTTGTCGGAGGATTATTTGCAGAAAGTTGCTTCAATTGGTGTCAGGAAGAAGCGTTTGTCTTGTCAGCGTGGTTCTTTAGAAATGAGTACTGATGAAAAGGACGGTTCTGACGATGTTATGGTGGTGGTTGAAACATTAGTAAGGAGAGAAAAGAATCATAACTCGTCGAAAGGAAATAGAAAAGAGAATTTATTGCTGTTTCGAACTAAGGTAGAAGATGTGGTGCCACAGAAAACGAGTGTGAAATCTGAGCAGGGAAATTTGTTGCCTCGACAGAAAATGTATAATTTGTCGCGAAGTGTTGTCCATGGAAAAGATGGATTGCGTGAAGCATTTCGGTTTTCGAAATTTCAATTGGATCGGAAGGATTTAACTTTTGACTCGAGAATTTCTGTTTCGAAAGCAAATCCTGAAAAGGAAGGAAATGGTAAGATTAAAAGCAACATTAGATCTAAGGTTGGGTTTGGTTATAGCTTTTCCAGAAAAGTGGCAATGACAAAACGTCTTGCTGATGATTCTGGAACTGTGACTAAGGATGACTTGTTTCAGAAATATTGGGGTTTAAGTAAGAATGTATCCGCAAATCGATCAACCGAGAAGTCAGAAGATATGAACTTAAAGTTGAAGAAGAGATGTTATGGAAACGATTTGTTCGAAAAGGAGCCAATGATTTCTCCATTGTCAAGCTCTGATCCTTCTCCTGGTTTCGTAGACAATCAAATCTCGCAGCAGACATGCTTAATGAACGAAGATGTGAAGAACAATGAAGACAGTAACATGTCTAAGAAAATTGCCTTCTCTCTTGATTCATCAGTGGATTTCTCACTGTCAGATGTGAAGACTAAGGTTGTTGGTTGGTCTGATAATAATCCATCCATGAAGCAATCTGAATCAATGGCATCTGTAACGATGCACGGAGACCGTGATTATTTAAGTCATGCTTCAAAGCAACAGGAGATATTGGAATTTCACGGAGACTTTGTGTATTCACTTACCACCGGGGCTGATGCAGATCATGTCGGTAACTTCCATGAGGGATATGAACCTAGTCCAATTTCAGTTTTGGATTCGACATTTAGCGAAGACATTTCAGTTATATCTGAATGCAGTGTTGCTGGTGTATGTGATTCCTCTGAAGCGGATGATGAAGAACTTGATTTGAATGTTTCAAGCGATGAAGATTGCGGCATAGAGCCTATAGGAAAATTTGAAAAGAAGAGAGATATAGTAGGCTTATCTAGAACAGAAGAAAGTAGAGACTTCTCCTATGTTGTCGAGGTCTTAACCGAAGCAGAAAAGAAATTCGGCGAGCAGCAGCTTTGGAAAAGATCTGAAAGGCGGCTTCTTTTCGATCGTATTAATTTAGGTTTGTCAGATATTCTACATCCATATTTATACGTTCCAATGTGGGAAACGCCTGTGTCAAGAAGATTGAATACTGAATTGAGACAGGATATGATTGAGGACAAGATGTGGGGATTGCTTGTTTCGCAAGAAAAGAAAGCTGGTAAGGAGTCAATAGACGATATGCTTGGAGGGGAAATTCGGTGGATAGAATTAGTTGAAGATATTGAAGGTTTTGTTAGAGAGGTAGTTAATGTGTTAATAGAGGAGCTTGTAGATGATATAGTTAGGTTAGAGAATTTTTGA 1749 0.3905 MESKYEGSSVILKLMGLDKVASRYETVRDRPKVLSEDYLQKVASIGVRKKRLSCQRGSLEMSTDEKDGSDDVMVVVETLVRREKNHNSSKGNRKENLLLFRTKVEDVVPQKTSVKSEQGNLLPRQKMYNLSRSVVHGKDGLREAFRFSKFQLDRKDLTFDSRISVSKANPEKEGNGKIKSNIRSKVGFGYSFSRKVAMTKRLADDSGTVTKDDLFQKYWGLSKNVSANRSTEKSEDMNLKLKKRCYGNDLFEKEPMISPLSSSDPSPGFVDNQISQQTCLMNEDVKNNEDSNMSKKIAFSLDSSVDFSLSDVKTKVVGWSDNNPSMKQSESMASVTMHGDRDYLSHASKQQEILEFHGDFVYSLTTGADADHVGNFHEGYEPSPISVLDSTFSEDISVISECSVAGVCDSSEADDEELDLNVSSDEDCGIEPIGKFEKKRDIVGLSRTEESRDFSYVVEVLTEAEKKFGEQQLWKRSERRLLFDRINLGLSDILHPYLYVPMWETPVSRRLNTELRQDMIEDKMWGLLVSQEKKAGKESIDDMLGGEIRWIELVEDIEGFVREVVNVLIEELVDDIVRLENF 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00791 582 PANTHER AFADIN 110 464 - -
Vifa1g00791 582 Pfam Domain of unknown function (DUF4378) 460 575 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00791 Vifa-Chr1 132259378 132262244 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00791 375 577 TRM (TON1 Recruiting Motif) Superfamily AT2G39435 30.081 1.10e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00791 - - cam:101499857 660.988