Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00782 ATGATGTGGGAATGGGACCAAGACGAACACCACCACCACCACACCACCTCTCCAAAACCCGATCAAATCCCCGACCCTAACTCCTATCTCAATTTCGATTTCTTCTCACCTCTCTCCAAACCCAAGGATTATTACAAGATATTGGAAGTGGATTATGATGCTAACGAGGATGCTATTCGCTCTAATTACATTCGTCTTGCTCTCAAATGGCACCCGGATAAACAGAAAGACCAGAACTCTGCTACGTCCATGTTTCAAGATATAAACGAGGCATATCAGGTTTTAAGTGATCCAGATAAAAGGAGAGACTATGACATAAATGGGATGCGTTACGAATACGATTACAATATCATTGATTATCTTAACCGTTACAAGGGTCTTATATTGACTTGCAATGGCCTCGGCATAAAACAATCGATTTGGTAG 426 0.4155 MMWEWDQDEHHHHHTTSPKPDQIPDPNSYLNFDFFSPLSKPKDYYKILEVDYDANEDAIRSNYIRLALKWHPDKQKDQNSATSMFQDINEAYQVLSDPDKRRDYDINGMRYEYDYNIIDYLNRYKGLILTCNGLGIKQSIW 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00782 141 SMART dnaj_3 42 100 IPR001623 -
Vifa1g00782 141 ProSitePatterns Nt-dnaJ domain signature. 85 104 IPR018253 -
Vifa1g00782 141 Gene3D DnaJ domain 36 120 IPR036869 -
Vifa1g00782 141 PRINTS DnaJ domain signature 45 63 IPR001623 -
Vifa1g00782 141 PRINTS DnaJ domain signature 80 100 IPR001623 -
Vifa1g00782 141 PRINTS DnaJ domain signature 63 78 IPR001623 -
Vifa1g00782 141 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 141 - -
Vifa1g00782 141 FunFam Chaperone protein DNAj, putative 35 122 - -
Vifa1g00782 141 ProSiteProfiles dnaJ domain profile. 43 108 IPR001623 -
Vifa1g00782 141 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g00782 141 SUPERFAMILY Chaperone J-domain 39 126 IPR036869 -
Vifa1g00782 141 CDD DnaJ 43 97 IPR001623 -
Vifa1g00782 141 Pfam DnaJ domain 43 105 IPR001623 -
Vifa1g00782 141 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00782 Vifa-Chr1 130313728 130316844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00782 36 105 C2H2 Transcription Factor Family AT1G74250 41.333 4.83e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00782 - - gmx:100804409 228.409