Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00777 ATGGCACCCAGTTTTGATTTTGCTAGTCTTCTTTGTACTGAAGACATCAGTTTTTTCAATGAAAATGATTTGGAGGGTTCAATGGAGGTTTTAGATGAACCATGGCAAGTTGAATATGATCCTCCAATCCTTGATGAACCACAGCAATTGGATGAACCAATTGGGTCGGTTCCACCATTGCTGAGTGATGAGAGTGTGAAGGTTTTGATTGGAAAAGAATGCTATCATGTGCCTGCTAGTGATTATGTTAGTAGGTTGAAAATTGGGGATTTGGATTTGGAGGGTAGAATGGAAGCCATTGATTGGATTCAAAAGGTTGGAATGCATTTTGGTTTTGGCCCTCTATGTCTTTATCTAGCTGTGAACTTCATGGATCGCTTCCTTTCTGCGGTTGATATGCTAAAGGATAGAATGTGGTCCATTCAACTCTTGGCTGTGGCTTCCTTGTATCTTGCAGCCAAAATTGATGAGACTGCAGTTCCTCGGTCTCTTGATATGCAGATGAATGAAAAGAAGTATTTATTCGATAACAAAACAATACTTAAGATGGAGCTTATGATACTAAGCACATTGAATTGGAGAATGCATTCAATCACACCTTTCTCCTTCATTGACTACTTTCTCAACAAGCTCAACCATGATCAAGTTCCAACCGAAGATTCATTTGCGCAATCTTTTCAACTCATTATGCGTACTATCAGAGGAACCGACTTCATTCAATTCAAGCCATCCGAAATCGCGGCAGCTGTTGCAGTAACAATATCTGCCGAAGGCGAAAACCAAACCGTTGAAACTGATAAAGCAGTTTCTCTTCTGACTCAATATGTAGAAAAGGAGAGAGTAATGAAGTGTATTGAAATGTTTCAACAGCTGGAATCATCAGATACTGCTTCTGCAGAGGATTCTCAATGCCTCAGCAACATAAATGCAACTACTACTTCATCATCACTTGCAAATTCTTCAAATAATACTAATAGCCCTGAAGCCAAACGCATCAAACCAAACAAAACCTATGAAGCATAG 1023 0.3949 MAPSFDFASLLCTEDISFFNENDLEGSMEVLDEPWQVEYDPPILDEPQQLDEPIGSVPPLLSDESVKVLIGKECYHVPASDYVSRLKIGDLDLEGRMEAIDWIQKVGMHFGFGPLCLYLAVNFMDRFLSAVDMLKDRMWSIQLLAVASLYLAAKIDETAVPRSLDMQMNEKKYLFDNKTILKMELMILSTLNWRMHSITPFSFIDYFLNKLNHDQVPTEDSFAQSFQLIMRTIRGTDFIQFKPSEIAAAVAVTISAEGENQTVETDKAVSLLTQYVEKERVMKCIEMFQQLESSDTASAEDSQCLSNINATTTSSSLANSSNNTNSPEAKRIKPNKTYEA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00777 340 CDD CYCLIN_AtCycD-like_rpt2 198 287 - -
Vifa1g00777 340 SUPERFAMILY Cyclin-like 61 196 IPR036915 -
Vifa1g00777 340 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Vifa1g00777 340 FunFam D6-type cyclin 192 286 - -
Vifa1g00777 340 MobiDBLite consensus disorder prediction 310 340 - -
Vifa1g00777 340 CDD CYCLIN_AtCycD-like_rpt1 96 193 - -
Vifa1g00777 340 Gene3D - 79 196 - -
Vifa1g00777 340 SMART cyclin_7 101 189 IPR013763 -
Vifa1g00777 340 SMART Cyclin_C_2 198 316 IPR004367 -
Vifa1g00777 340 FunFam D6-type cyclin 79 191 - -
Vifa1g00777 340 Pfam Cyclin, C-terminal domain 198 297 IPR004367 -
Vifa1g00777 340 Gene3D - 69 286 - -
Vifa1g00777 340 Pfam Cyclin, N-terminal domain 66 195 IPR006671 -
Vifa1g00777 340 SUPERFAMILY Cyclin-like 179 290 IPR036915 -
Vifa1g00777 340 PANTHER CYCLINS 67 293 IPR039361 -
Vifa1g00777 340 MobiDBLite consensus disorder prediction 310 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00777 Vifa-Chr1 129841164 129843293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00777 55 299 Core Cell Cycle Gene Families AT2G22490 41.434 5.37e-63 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00777 K18810 - tpra:123922384 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00777 1 129841164 129843293 Vifa1g00777 1 129841164 129843293 ECH