Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00771 ATGGATCCAAAAGTGTGTGATGAATCAGTGAAAGAAGCTTCAGATTTCAAGTGTCAGAACATTCTCCAACCCATTGATGAATCGATTGTGTGTCCCACTCCAGAGAAGAAGACTGAACTATTACCCAACAAATTCAAGGACCCAATTGCCCAGCTTCCAGAAAATTACAGGGTCATTGCTGATTTGTTTAGGCATATGAGTTGTGCGCTTAGATTGCTGCATCTGCGTAAAAAGTCTCCAACTTTTTTAAATGTTTGCAGCAAGGTTGAAGTTCTTGCCAAAAGAAACTTCTCACTTGCTGATCTAGCGCAGATGAAGTATATACTCCCTGAAGGTGTAGAAATTGAAAAGGTGGTTGTTATTGATAAGAAGAGCTTGTGTATGAAGCCGGATTTGAAGATAACCTTGGTTTTTGAAGTTGTAAAAGACCGCTCTGAACAGTCTGCTGATATAGCTCTTAGACAATATTTTAATTCCAGGCTGATTAATTTCTTTAATCTGCACCCTCAGGTTACTAAGATTCCAGAGTCCAGACTACCAGAGCCCTTTAGCCAAGAAGCTTGTAATTTGACTTTCAATAACGGGCGTGCAGATATTGCAGCAGAACCTTCATCAACTTCCAATGAAACTGTAGAGCCGCTGAAAAACTTACATTTGACAAATTTGGCAGCAGAACTTTCATCAACTTCCAATGAAATTGTAGAGCCGCTGAATTACTTACATTTGACTCCATCTTCTAAAAGTCTTTCTCAGAAGAATACCGCTGACCCGGCTAAGCTAGTTCAGAGCTTTTCATCATCTGAAAACTCTCTGTCATCCGATGAATCTGACTCCCTAGACGACCAAGAAAGTGAAAGCACATGGCAGAAAGAATGTACACCGTTGTCAGATTCTGAGAGTAATCTTAATGCAGAAAGTGGCAAGCAGAAGGAGTCATTGTCAATGTCTTTTCAGACACCTGCACTGTCAGCACCTGAAAGATTGGTGCTCGGTTCTGATGTTAAGCTGCAGAAAATGACCGCTCAAAAGTCTACGTCAGGCTTTAAGCCCGCAAAAAGAGTGCTTGACTTTACAAGCACAGAAGGTAACGGTGATTTGGATAATAGAGTAGACCTGTTAGAATCTAGCAAAGCTATGCATGGATTTCATTGCAGCTCTAAACTTAGCAAAGGATGTCCTGAGGATTGCAAATCTTTTGATTCTGTTTCCCTACCTCGGGAGGTACAACATAATCTTTGTTATTCTTTTGAGAAAATCAACCAAAATCAAATTAGTTCGGACGCAGCAGATAACGATCCTCCATCATTAGTGGAACTGGTTAATGTGATTGACTCAATATTTAGCTCTGTCAACACAAATGAAATCACAAAAGAGGAGCTCCTGCAAAAGATAATGCGGAACTGTTTAGATTTTGTTGAGACTAGAGAAGCTGAAGAACAGATTGAGATTTTGGAAAAGATTTTGCCAGATTGGATTTGCAAGAAGTCGCTTGCTTCTGTAGATGGAGTCACAATGTACTGTGTTAATAATGAGATAGATTTGGACTCAGTTCGATCAAGACTTCTCAGCAATGTAACCAAAGGAGACGAGTGA 1593 0.4011 MDPKVCDESVKEASDFKCQNILQPIDESIVCPTPEKKTELLPNKFKDPIAQLPENYRVIADLFRHMSCALRLLHLRKKSPTFLNVCSKVEVLAKRNFSLADLAQMKYILPEGVEIEKVVVIDKKSLCMKPDLKITLVFEVVKDRSEQSADIALRQYFNSRLINFFNLHPQVTKIPESRLPEPFSQEACNLTFNNGRADIAAEPSSTSNETVEPLKNLHLTNLAAELSSTSNEIVEPLNYLHLTPSSKSLSQKNTADPAKLVQSFSSSENSLSSDESDSLDDQESESTWQKECTPLSDSESNLNAESGKQKESLSMSFQTPALSAPERLVLGSDVKLQKMTAQKSTSGFKPAKRVLDFTSTEGNGDLDNRVDLLESSKAMHGFHCSSKLSKGCPEDCKSFDSVSLPREVQHNLCYSFEKINQNQISSDAADNDPPSLVELVNVIDSIFSSVNTNEITKEELLQKIMRNCLDFVETREAEEQIEILEKILPDWICKKSLASVDGVTMYCVNNEIDLDSVRSRLLSNVTKGDE 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00771 530 MobiDBLite consensus disorder prediction 247 317 - -
Vifa1g00771 530 SUPERFAMILY "Winged helix" DNA-binding domain 50 183 IPR036390 -
Vifa1g00771 530 CDD Cdt1_m 33 182 IPR014939 -
Vifa1g00771 530 Gene3D - 434 528 IPR038090 -
Vifa1g00771 530 SMART CDT1_2 52 181 IPR014939 -
Vifa1g00771 530 PANTHER DNA REPLICATION FACTOR CDT1 44 522 IPR045173 GO:0003677|GO:0030174|GO:0071163
Vifa1g00771 530 MobiDBLite consensus disorder prediction 247 273 - -
Vifa1g00771 530 MobiDBLite consensus disorder prediction 288 317 - -
Vifa1g00771 530 Pfam DNA replication factor Cdt1 C-terminal domain 436 493 IPR032054 -
Vifa1g00771 530 Pfam DNA replication factor CDT1 like 52 118 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00771 Vifa-Chr1 127776481 127780013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00771 421 521 Core DNA Replication Machinery Family AT3G54710 35.644 9.82e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00771 K10727 - gmx:102670055 477.633