Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00770 ATGGATCCAAAAGTGTGTGATGAATCAGTGAAAGAAGCTTCAGATTTCAAGTGTCAGAACATTCTCCAACCCATTGATGAATCGATTGTGTGTCCCACTCCAGAGAAGAAGACTGAACTATTACCCAACAAATTCAAGGACCCAATTGCCCAGCTTCCAGAAAAGGTCATTGCTGATTTGTTTAGGCATATGAGTTGTGCGCTTAGATTGCTGCATCTGCGTAAAAAGTCTCCAACTTTTTTAAATGTTTGCAGCAAGGTTGAAGTTCTTGCCAAAAGAAACTTCTCACTTGCTGATCTAGCGCAGATGAAGTATATACTCCCTGAAGGTGTAGAAATTGAAAAGGTGGTTGTTATTGATAAGAAGAGCTTGTGTATGAAGCCGGATTTGAAGATAACCTTGGTTTTTGAAGTTGTAAAAGACCGCTCTGAACAGTCTGCTGATATAGCTCTTAGACAATATTTTAATTCCAGGCTGATTAATTTCTTTAATCTGCACCCTCAGGTTACTAAGATTCCAGAGTCCAGACTACCAGAGCCCTTTAGCCAAGAAGCTTGTAATTTGACTTTCAATAACGGGCGTGCAGATATTGCAGCAGAACCTTCATCAACTTCCAATGAAACTGTAGAGCCGCTGAAAAACTTACATTTGACAAATTTGGCAGCAGAACTTTCATCAACTTCCAATGAAATTGTAGAGCCGCTGAATTACTTACATTTGACTCCATCTTCTAAAAGTCTTTCTCAGAAGAATACCGCTGACCCGGCTAAGCTAGTTCAGAGCTTTTCATCATCTGAAAACTCTCTGTCATCCGATGAATCTGACTCCCTAGACGACCAAGAAAGTGAAAGCACATGGCAGAAAGAATGTACACCGTTGTCAGATTCTGAGAGTAATCTTAATGCAGAAAGTGGCAAGCAGAAGGAGTCATTGTCAATGTCTTTTCAGACACCTGCACTGTCAGCACCTGAAAGATTGGTGCTCGGTTCTGATGTTAAGCTGCAGAAAATGACCGCTCAAAAGTCTACGTCAGGCTTTAAGCCCGCAAAAAGAGTGCTTGACTTTACAAGCACAGAAGGTAACGGTGATTTGGATAATAGAGTAGACCTGTTAGAATCTAGCAAAGCTATGCATGGATTTCATTGCAGCTCTAAACTTAGCAAAGGATGTCCTGAGGATTGCAAATCTTTTGATTCTGTTTCCCTACCTCGGGAGGTACAACATAATCTTTGTTATTCTTTTGAGAAAATCAACCAAAATCAAATTAGTTCGGACGCAGCAGATAACGATCCTCCATCATTAGTGGAACTGGTTAATGTGATTGACTCAATATTTAGCTCTGTCAACACAAATGAAATCACAAAAGAGGAGCTCCTGCAAAAGATAATGCGGAACTGTTTAGATTTTGTTGAGACTAGAGAAGCTGAAGAACAGATTGAGATTTTGGAAAAGATTTTGCCAGATTGGATTTGCAAGAAGTCGCTTGCTTCTGTAGATGGAGTCACAATGTACTGTGTTAATAATGAGATAGATTTGGACTCAGTTCGATCAAGACTTCTCAGCAATGTAACCAAAGGAGACGAGTGA 1587 0.4014 MDPKVCDESVKEASDFKCQNILQPIDESIVCPTPEKKTELLPNKFKDPIAQLPEKVIADLFRHMSCALRLLHLRKKSPTFLNVCSKVEVLAKRNFSLADLAQMKYILPEGVEIEKVVVIDKKSLCMKPDLKITLVFEVVKDRSEQSADIALRQYFNSRLINFFNLHPQVTKIPESRLPEPFSQEACNLTFNNGRADIAAEPSSTSNETVEPLKNLHLTNLAAELSSTSNEIVEPLNYLHLTPSSKSLSQKNTADPAKLVQSFSSSENSLSSDESDSLDDQESESTWQKECTPLSDSESNLNAESGKQKESLSMSFQTPALSAPERLVLGSDVKLQKMTAQKSTSGFKPAKRVLDFTSTEGNGDLDNRVDLLESSKAMHGFHCSSKLSKGCPEDCKSFDSVSLPREVQHNLCYSFEKINQNQISSDAADNDPPSLVELVNVIDSIFSSVNTNEITKEELLQKIMRNCLDFVETREAEEQIEILEKILPDWICKKSLASVDGVTMYCVNNEIDLDSVRSRLLSNVTKGDE 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00770 528 Pfam DNA replication factor Cdt1 C-terminal domain 434 491 IPR032054 -
Vifa1g00770 528 SUPERFAMILY "Winged helix" DNA-binding domain 51 181 IPR036390 -
Vifa1g00770 528 MobiDBLite consensus disorder prediction 245 315 - -
Vifa1g00770 528 MobiDBLite consensus disorder prediction 245 271 - -
Vifa1g00770 528 MobiDBLite consensus disorder prediction 286 315 - -
Vifa1g00770 528 SMART CDT1_2 52 179 IPR014939 -
Vifa1g00770 528 Gene3D - 432 526 IPR038090 -
Vifa1g00770 528 PANTHER DNA REPLICATION FACTOR CDT1 44 520 IPR045173 GO:0003677|GO:0030174|GO:0071163
Vifa1g00770 528 Pfam DNA replication factor CDT1 like 55 116 IPR014939 -
Vifa1g00770 528 CDD Cdt1_m 33 180 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00770 Vifa-Chr1 127776481 127780013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00770 419 519 Core DNA Replication Machinery Family AT3G54710 35.644 9.25e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00770 K10727 - gmx:102670055 472.241