Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00748 ATGAGAAGACTCAGGTTATTATCCCCGTATCGGCGCCATTTTCTCTCGTCCCTTGCTTCAGAATCTCGAGATTCGTTCCGGAAATTCTTCTCCTCTCATCAATCGTTGTTGCTTTCACGAACTTTACTCGGTTGCGGTTTTGATACGAAAAATGAGGAGTTTCGAAATCGGACGGTTCCACTGGGATATCGTTATGGTCAAGCTACAGCTTATTCTTCTACTGCGGAACAGAACTATTATCAGGTGCTTGGTGTTTCTGAAAATGCTAGTCAGGATGAGATAAAGAAGGCGTTTCGCGTGCTTGCTAAAAAGTACCATCCAGATGCAAATAAGAATAGTCCATCGGCAAAGAGGAAGTTTCAAGATATAAGAGAAGCTTATGAGACATTGAGAGACTCTAAAAAGAGGGCAGAGTATGACAAGATGCGTGCTTATTGTTCAGAGAATATGAAATATAGTAACCACAATTATGATGATGCCGAAAGGTTTAGAAATGCCTATCGTACTCATTTCTCTGATTCATTTCATAATGTATTTTCTGAGATATTTGAAGAAGCAACAACTCAGTTCTCGCCAAATATAGAGGTGGAGTTATCACTTACTTTCTCAGAAGCCGCGAGAGGATGCACCAAACATGTGTCATTTGATGCGTCAGTTCCCTGTGATTATTGCTATGGACAGGGATATCCAAAAAATGCTACCCCAACAGTTTGTCCAACATGCAGGGGCTTAGGTCGAGTTACAATCCCACCATTTACATCAACATGCATTACTTGTAAAGGAGCTGGGCGCGTTATTAAGGAGTTTTGTTTGTCATGTGGAGGATCCGGGGTTATTGAAGGGATTAAAGAGGTTAAAGTTACTATACCATCAGGTGTTGATTCAGGAGATACCATCCATGTGCCAGAAGGTGGGAATGCTGCTGGAAATGGTGGTCGACATGGAAGTTTATACATAAAAATAAAGGTGGTTGAGGATCCAGTCTTTGAGAGGGATGGTGCAGATATCTATGTGGAATCTAATATTAGCTTTACACAGGCTATTCTTGGTGGCAAAGTTGAGGTGCCTACTTTATCAGGGAAGATGCAAATAAATATACCTAAGGGTGTTCAACCAGGACAGCTGCTAGCATTTAGAGGCAAAGGACTGCCAAAGCATGGGTATTTTGCATTTCATGGGGATCAATATGTGCGTTTCCGTGTAAACTTTCCCATTACAATCAATGAACGGCAACGTGCTATACTTGAAGAATTTGCTACGGAGGAAATAAAGGAGGGTAGTAGTTCAATATTAGAAGGAAATTGGCTTTACCAGCAGCTATCTACTGGTTGA 1332 0.4137 MRRLRLLSPYRRHFLSSLASESRDSFRKFFSSHQSLLLSRTLLGCGFDTKNEEFRNRTVPLGYRYGQATAYSSTAEQNYYQVLGVSENASQDEIKKAFRVLAKKYHPDANKNSPSAKRKFQDIREAYETLRDSKKRAEYDKMRAYCSENMKYSNHNYDDAERFRNAYRTHFSDSFHNVFSEIFEEATTQFSPNIEVELSLTFSEAARGCTKHVSFDASVPCDYCYGQGYPKNATPTVCPTCRGLGRVTIPPFTSTCITCKGAGRVIKEFCLSCGGSGVIEGIKEVKVTIPSGVDSGDTIHVPEGGNAAGNGGRHGSLYIKIKVVEDPVFERDGADIYVESNISFTQAILGGKVEVPTLSGKMQINIPKGVQPGQLLAFRGKGLPKHGYFAFHGDQYVRFRVNFPITINERQRAILEEFATEEIKEGSSSILEGNWLYQQLSTG 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00748 443 Gene3D - 251 284 - -
Vifa1g00748 443 Gene3D - 216 250 - -
Vifa1g00748 443 Hamap Chaperone protein DnaJ [dnaJ]. 75 426 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vifa1g00748 443 CDD DnaJ 78 132 IPR001623 -
Vifa1g00748 443 SMART dnaj_3 77 135 IPR001623 -
Vifa1g00748 443 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 34 422 - -
Vifa1g00748 443 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 208 279 IPR036410 -
Vifa1g00748 443 Gene3D - 324 431 - -
Vifa1g00748 443 SUPERFAMILY Chaperone J-domain 74 177 IPR036869 -
Vifa1g00748 443 Gene3D - 192 322 - -
Vifa1g00748 443 ProSiteProfiles Zinc finger CR-type profile. 208 282 IPR001305 GO:0031072|GO:0051082
Vifa1g00748 443 Pfam DnaJ C terminal domain 194 404 IPR002939 -
Vifa1g00748 443 Pfam DnaJ domain 78 140 IPR001623 -
Vifa1g00748 443 CDD DnaJ_C 192 404 - -
Vifa1g00748 443 Pfam DnaJ central domain 221 277 IPR001305 GO:0031072|GO:0051082
Vifa1g00748 443 ProSitePatterns Nt-dnaJ domain signature. 120 139 IPR018253 -
Vifa1g00748 443 PRINTS DnaJ domain signature 80 98 IPR001623 -
Vifa1g00748 443 PRINTS DnaJ domain signature 115 135 IPR001623 -
Vifa1g00748 443 PRINTS DnaJ domain signature 135 154 IPR001623 -
Vifa1g00748 443 PRINTS DnaJ domain signature 98 113 IPR001623 -
Vifa1g00748 443 ProSiteProfiles dnaJ domain profile. 78 143 IPR001623 -
Vifa1g00748 443 SUPERFAMILY HSP40/DnaJ peptide-binding domain 192 330 IPR008971 GO:0006457|GO:0051082
Vifa1g00748 443 FunFam Chaperone protein dnaJ 1, mitochondrial 324 429 - -
Vifa1g00748 443 SUPERFAMILY HSP40/DnaJ peptide-binding domain 328 415 IPR008971 GO:0006457|GO:0051082
Vifa1g00748 443 Gene3D DnaJ domain 74 191 IPR036869 -
Vifa1g00748 443 CDD DnaJ_zf 221 277 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00748 Vifa-Chr1 125369694 125386545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00748 70 144 C2H2 Transcription Factor Family AT1G74250 41.975 1.11e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00748 - - gmx:100809440 691.419