Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00746 ATGAGAAGACTCAGGTTATTATCCCCGTATCGGCGCCATTTTCTCTCGTCCCTTGCTTCAGAATCTCGAGATTCGTTCCGGAAATTCTTCTCCTCTCATCAATCGTTGTTGCTTTCACGAACTTTACTCGGTTGCGGTTTTGATACGAAAAATGAGGAGTTTCGAAATCGGACGGTTCCACTGGGATATCGTTATGGTCAAGCTACAGCAGCTTATTCTTCTACTGCGGAACAGAACTATTATCAGGTGCTTGGTGTTTCTGAAAATGCTAGTCAGGATGAGATAAAGAAGGCGTTTCGCGTGCTTGCTAAAAAGTACCATCCAGATGCAAATAAGAATAGTCCATCGGCAAAGAGGAAGTTTCAAGATATAAGAGAAGCTTATGAGACATTGAGAGACTCTAAAAAGAGGGCAGAGTATGACAAGATGCGTGCTTATTGTTCAGAGAATATGAAATATAGTAACCACAATTATGATGATGCCGAAAGGTTTAGAAATGCCTATCGTACTCATTTCTCTGATTCATTTCATAATGTATTTTCTGAGATATTTGAAGAAGCAACAACTCAGTTCTCGCCAAATATAGAGGTGGAGTTATCACTTACTTTCTCAGAAGCCGCGAGAGGATGCACCAAACATGTGTCATTTGATGCGTCAGTTCCCTGTGATTATTGCTATGGACAGGGATATCCAAAAAATGCTACCCCAACAGTTTGTCCAACATGCAGGGGCTTAGGTCGAGTTACAATCCCACCATTTACATCAACATGCATTACTTGTAAAGGAGCTGGGCGCGTTATTAAGGAGTTTTGTTTGTCATGTGGAGGATCCGGGGTTATTGAAGGGATTAAAGAGGTTAAAGTTACTATACCATCAGGTGTTGATTCAGGAGATACCATCCATGTGCCAGAAGGTGGGAATGCTGCTGGAAATGGTGGTCGACATGGAAGTTTATACATAAAAATAAAGGTGGTTGAGGATCCAGTCTTTGAGAGGGATGGTGCAGATATCTATGTGGAATCTAATATTAGCTTTACACAGGCTATTCTTGGTGGCAAAGTTGAGGTGCCTACTTTATCAGGGAAGATGCAAATAAATATACCTAAGGGTGTTCAACCAGGACAGCTGCTAGCATTTAGAGGCAAAGGACTGCCAAAGCATGGGTATTTTGCATTTCATGGGGATCAATATGTGCGTTTCCGTGTAAACTTTCCCATTACAATCAATGAACGGCAACGTGCTATACTTGAAGAATTTGCTACGGAGGAAATAAAGGAGGGTAGTAGTTCAATATTAGAAGGAAATTGGTGGCAGCAAATTCTTGAATATTCGACGAGTCCAAAGTTTATGCTGGAACTATCTATGCTGTTATTAGTCCTTGTCTTCATTAACAAAATGTTGAGCTGA 1407 0.4101 MRRLRLLSPYRRHFLSSLASESRDSFRKFFSSHQSLLLSRTLLGCGFDTKNEEFRNRTVPLGYRYGQATAAYSSTAEQNYYQVLGVSENASQDEIKKAFRVLAKKYHPDANKNSPSAKRKFQDIREAYETLRDSKKRAEYDKMRAYCSENMKYSNHNYDDAERFRNAYRTHFSDSFHNVFSEIFEEATTQFSPNIEVELSLTFSEAARGCTKHVSFDASVPCDYCYGQGYPKNATPTVCPTCRGLGRVTIPPFTSTCITCKGAGRVIKEFCLSCGGSGVIEGIKEVKVTIPSGVDSGDTIHVPEGGNAAGNGGRHGSLYIKIKVVEDPVFERDGADIYVESNISFTQAILGGKVEVPTLSGKMQINIPKGVQPGQLLAFRGKGLPKHGYFAFHGDQYVRFRVNFPITINERQRAILEEFATEEIKEGSSSILEGNWWQQILEYSTSPKFMLELSMLLLVLVFINKMLS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00746 468 ProSitePatterns Nt-dnaJ domain signature. 121 140 IPR018253 -
Vifa1g00746 468 Pfam DnaJ central domain 222 278 IPR001305 GO:0031072|GO:0051082
Vifa1g00746 468 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 209 280 IPR036410 -
Vifa1g00746 468 Hamap Chaperone protein DnaJ [dnaJ]. 76 443 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vifa1g00746 468 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 35 423 - -
Vifa1g00746 468 ProSiteProfiles dnaJ domain profile. 79 144 IPR001623 -
Vifa1g00746 468 PRINTS DnaJ domain signature 136 155 IPR001623 -
Vifa1g00746 468 PRINTS DnaJ domain signature 81 99 IPR001623 -
Vifa1g00746 468 PRINTS DnaJ domain signature 116 136 IPR001623 -
Vifa1g00746 468 PRINTS DnaJ domain signature 99 114 IPR001623 -
Vifa1g00746 468 SUPERFAMILY HSP40/DnaJ peptide-binding domain 329 416 IPR008971 GO:0006457|GO:0051082
Vifa1g00746 468 CDD DnaJ_zf 222 278 IPR001305 GO:0031072|GO:0051082
Vifa1g00746 468 Gene3D DnaJ domain 75 192 IPR036869 -
Vifa1g00746 468 Pfam DnaJ domain 79 141 IPR001623 -
Vifa1g00746 468 Pfam DnaJ C terminal domain 195 405 IPR002939 -
Vifa1g00746 468 Gene3D - 325 432 - -
Vifa1g00746 468 Gene3D - 193 323 - -
Vifa1g00746 468 SUPERFAMILY Chaperone J-domain 75 178 IPR036869 -
Vifa1g00746 468 ProSiteProfiles Zinc finger CR-type profile. 209 283 IPR001305 GO:0031072|GO:0051082
Vifa1g00746 468 SMART dnaj_3 78 136 IPR001623 -
Vifa1g00746 468 Gene3D - 252 285 - -
Vifa1g00746 468 Gene3D - 217 251 - -
Vifa1g00746 468 CDD DnaJ_C 193 405 - -
Vifa1g00746 468 FunFam Chaperone protein dnaJ 1, mitochondrial 325 430 - -
Vifa1g00746 468 CDD DnaJ 79 133 IPR001623 -
Vifa1g00746 468 SUPERFAMILY HSP40/DnaJ peptide-binding domain 193 331 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00746 Vifa-Chr1 125369586 125386545 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00746 70 145 C2H2 Transcription Factor Family AT1G74250 39.506 1.26e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00746 - - gmx:100809440 672.544