Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00742 ATGGCTGGCAAGGTGGCGAAGGCAGCATACGATGCGAAGATGGGAAAACTTCTTCGAGAGTACACACAAGTCTTGGTGGTTTCAGCCGACAATGTTGGATCAAACCAGCTTCAGGGTATAAGAAGGACACTGCACGAGGATTCAGTGGTAGTGATGGGGAAGAACTCATTGATGAAACGCTCGATTATCCAAGAAGCGGAGAAAACTGGGAACAACAACGCTTTCCTTAATCTCGTTCCACTCCTTGTGGGGAATGTTGCCTTGATTTTTACCAAAGGTGACTTGAGGGATGTTAGTGAACGGATTGCCAAGCTCAAGGTTGTTAATCCGATTCTCATGTGTCCTAAGTATATGTCGTATGATTCGTACAAAACTTGTTCCTATATGCAAACCGGACAATTGCCACTGGGTCTCACGTGTTGTAACCAACAACCTTCTCAAGCTTCTGAGCCGTTTCTTGTAAGCTCAAAATTCTCACCACCTCAACATTGTTACTTGTCGAGATCGAGACAGCTCTTGGCGACAAGTATATGGTCTCCATTTCTTCTTTTGGCTGGAAATGCTGAAGAATGGAAATGA 579 0.4473 MAGKVAKAAYDAKMGKLLREYTQVLVVSADNVGSNQLQGIRRTLHEDSVVVMGKNSLMKRSIIQEAEKTGNNNAFLNLVPLLVGNVALIFTKGDLRDVSERIAKLKVVNPILMCPKYMSYDSYKTCSYMQTGQLPLGLTCCNQQPSQASEPFLVSSKFSPPQHCYLSRSRQLLATSIWSPFLLLAGNAEEWK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00742 192 Gene3D - 3 127 IPR043141 -
Vifa1g00742 192 SUPERFAMILY Ribosomal protein L10-like 7 108 IPR043141 -
Vifa1g00742 192 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 5 141 - -
Vifa1g00742 192 Pfam Ribosomal protein L10 6 104 IPR001790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00742 Vifa-Chr1 124890527 124891247 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00742 1 110 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 62.281 9.93e-39 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00742 K02941 - jre:108980032 143.665