Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00735 ATGGATTCTTCTGTGTTGACCTCTCAGTTTAACCACTTCCGAACCACCGCGAATTCGTTTCTATCTCAATACGAACCTCTCGCTCTGATTCTCGTTCCGCTTTTCACTCTCTTTGTCGCGAACGTAGTTCGTTCGGTTTTCCAAGTTTTTTGTGATAAAGGAGTCAAAGCTACTCTCCTAGGGTTCTTCATGAACTTCATCAAATTGATTCCTGGTGTGAAGAGTTATATAGATGCTGAAAAACAGAAGGTTGTGGATAAGATGCAGTCAGATGGTAAATCTAAAAGAGATGGTTGGAAGACAGAGTTGCCGAGCACGGGGTTGGGGACATCTGTCCTTGAGAAAATGAAAGAAGAGAAAAGAAACGATGCAGTTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAGTCTAGTGAACATTTTTATGTCATAAATGAGGCCTGCTCAATGTTTGCACATACCAACCCTTTGCATTTGGATGTATTCCAGAGTGTCGTACGCTTTGAGGCAGAAGTGGTTGCAATGACAGCGGCACTTCTCGGAAGTAAAGAAAAGGCATCTGGAGGACAAATATGTGGAAACATGACATCAGGAGGGACTGAAAGTATATTATTAGCTGTTAAATCATCTCGTGACTATATGAAATCCAAAAAAGGAATTACAAGACCCGAAATGATAATTCCCGAGTCTGGTCACTCAGCATATGACAAAGCTGCACAGTATTTTAACATAAAACTATGGCGCGTTCCGGTTAACAAAAATTTTCAAGCAGATGTGAAAGCAATTCGACGTTATATTAACAAAAATACCATTATGATTGTTGGATCTTCTCCCGGGTTTCCTCATGGGATAATAGACCCCATTGAAGAACTTGGTCAACTAGCATCAAGCTTTGGCATTTGTTTCCATGTGGACCTTTGCCTCGGTGGCTTTGTATTACCTTTTGCTCGTGAGCTTGGGTACGATATTCCACCTTACGATTTTTCTGTTAAAGGGGTTACTTCAATATCAGTGGATGTGCATAAATATGGGTTAGCTCCCAAAGGAACAAGTATCGTTCTATATAGGAACCATGAAATCAGAAAGAATCAATTTGTTGCCGTTACCGAGTGGTCTGGTGGTTTGTATGTATCTCCAACCATAGCCGGAAGTAGACCGGGAAGCCTTATTGCTGGTGCATGGGCAGCAATGATGTCTCTAGGGAAAGAAGGTTACTTGGAACATACCAAAGCAATTATGGAAGGATCAAAAAGATTACAAAAAGGCGTAGAGGACATTTCTGAGTTGTTTATCATTGGAAAACCCGATATGACAATCGTTGCTTTTGGATCCAAAGTTCTGGATATATTTGAGGTCAACGATATCATGTCATCCAAAGGTTGGCATTTGAATGCATTGCAGAGACCCAACAGCATCCATATCTGCGTGACACTGCAACATGTCCCAGTTGTTGACGACTTTATAAGGGATTTAAAGGAATCTGTGGAAACTGTGAAACAAAATCCCGGTCCAATAAGTGGAGGACTGGCGCCTATATATGGCGCGGCGGGGAAGATGCCCGATCGAGGAACAGTTCGGGAATTGCTGGTTGATTATATGGATGGTACATGCTAG 1626 0.4207 MDSSVLTSQFNHFRTTANSFLSQYEPLALILVPLFTLFVANVVRSVFQVFCDKGVKATLLGFFMNFIKLIPGVKSYIDAEKQKVVDKMQSDGKSKRDGWKTELPSTGLGTSVLEKMKEEKRNDAVWQGKCSGTVYIGGSESSEHFYVINEACSMFAHTNPLHLDVFQSVVRFEAEVVAMTAALLGSKEKASGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPESGHSAYDKAAQYFNIKLWRVPVNKNFQADVKAIRRYINKNTIMIVGSSPGFPHGIIDPIEELGQLASSFGICFHVDLCLGGFVLPFARELGYDIPPYDFSVKGVTSISVDVHKYGLAPKGTSIVLYRNHEIRKNQFVAVTEWSGGLYVSPTIAGSRPGSLIAGAWAAMMSLGKEGYLEHTKAIMEGSKRLQKGVEDISELFIIGKPDMTIVAFGSKVLDIFEVNDIMSSKGWHLNALQRPNSIHICVTLQHVPVVDDFIRDLKESVETVKQNPGPISGGLAPIYGAAGKMPDRGTVRELLVDYMDGTC 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00735 541 Pfam Pyridoxal-dependent decarboxylase conserved domain 169 447 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vifa1g00735 541 SUPERFAMILY PLP-dependent transferases 78 505 IPR015424 -
Vifa1g00735 541 FunFam sphingosine-1-phosphate lyase 1 141 405 - -
Vifa1g00735 541 PANTHER - 53 541 - -
Vifa1g00735 541 FunFam Sphingosine-1-phosphate lyase 1 501 540 - -
Vifa1g00735 541 Gene3D Aspartate Aminotransferase, domain 1 110 504 IPR015422 GO:0003824
Vifa1g00735 541 Gene3D - 101 538 - -
Vifa1g00735 541 Gene3D - 138 405 IPR015421 GO:0003824
Vifa1g00735 541 FunFam Sphingosine-1-phosphate lyase 1 394 504 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00735 157 501 Calmodulin-binding Proteins AT3G17760 25.956 3.79e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00735 K01634 - gmx:100794743 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00735 1 122837834 122844992 Vifa1g00735 1 122837834 122844992 ECH