Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00733 ATGGTACTCACCGGCAGAGAAAGTTTGTCTCGATTGATCGGAAAACGCCGCCGTTTCCTCCCCAATCGTCACTCTATTCTCTCCGATCCCATTCCAAACCCTAACCACCAACTCTCACAACAACAACAACAACCTACCACACCCGGTGACGGTGACGGTGACAACCCCCAAAACGACGCCGTACAGTGTCCCGTTTGTTCCCTCACACTTCCCTCCGATAATCACCGTATCAACACTCATCTCGATTCGTGTCTCTCTCAACCTAAACTAAGCGGAACAAAACGGAAACTCACTCAGCGGACTCTACTTCAGTTAAACTTCACTCGCCCTGATCCACACGCGCCGGATTACATGCTTCCAAAAAAATCGCAGTTCACTGAAAGTCCCATTGCTGTTAAGGATTCTGCAGTTATTACAACTGCATCTTCGCCGTCCGAATTGAACGTTATCGACACTGACCATCGTGATATTGTTGACAATGTTGATGATGAATGTGACATTTTTGAAGTAAAGCTTGAAACTTTGATTGTGGGTAGGAGATATGCTGGTCGAGAGGAAGTATGTGCTGGTGATATGGTCTCTCTTTCAAGAGACTCGCAGAATGTTAAGGATCCAAATGCCATCAAGGTTGTTTCTGAAGATTCCGGTGGGTGTTCTAAATTTCTAGGTTATCTCCCTCGCGAGCTGGCACAGTATCTATCTCCTATAATTGACAACTATGACATTGTATTTCAGGGACATGTCACTTCTGTTCCTAAACATTCTCGTGATGCAGTTCCAATTCAGATTATGTGCCACAGAACACCAGCTGGGGAAAGAAAGTATGAAGATGAGACTTTTAAATGTTTATGGAAAAATGCTCAGCATGTCGTTGAATCTGCTATCAAGAATCCTTCATCTGTGACGTACCAGCTGAATTTTTGTCTTATGATACAAGAGACCTTAAAAAATAATATTCACCTTCTAACAGAAGCTGAAAAAACCTATATCGAATCATTCACTTCACTCTCAAATGATAGTCAGAGACTTTTTATTCGGATATACACTAGAAAAGGACCTTGGTTTCACATATCTAGTATATCGTATCCTGAAATATTGGATACTCAAAAGGCAGTCAAGGAACTTGCGGAGAAAGAATACATATGCACTGTCGAAGATAGAAATCAACTATGTGAAAGTGATATGAATGATATATTAGATGTGCTCACCGTCTCTGAGCTGCGTGAAATTTTGTGTTTCTTGCTTAAAAAGAGTTGCGGTCACGGGATGAAGAAGCAAGATCTCATTTCATCTATTCTTTCTACATCTGCAGGATTATGGCCACATCTGTCAAATATGATTTTAGATAAAACTGGTTTCTGTATCAAGATTTCTTCAAAAGCTGAATCACTTCTCTGGCGTATCGAGAGACTTTTCTTCTTAAATGGAGAACAGGATCTCTCGTCCTTTCTACTAGTTGATATAGGAAAAATCAAATATCCAACTTATACCTGCACAATATCGGAACCAATATTCTCGAATCGCATGGATCTTCTTGCATTTGAAGAGGCCATTGAAGTGGCACAAGTTATGGATGAGGCTCTTGATGCAAACAAAACTGATATTGTATTGAGGTGCATAAAGATTGCTGAATCCCGTGTATCTGCTGTGTTGCCCATCCCGTACTCGGCTTCTAAATCAGTATCTACATTCCATCACTTATTTACAGCATCATGGGTATACTCCAAAGTGGTTACGTTAGGGATTTCTTTTCTTGAGCAGGAGCGCAGGTACAGTGATGCAATCGACTTACTTAAGCGGCTGCAAAATGTTTTCACTTGTGATGTAAAAAGAGGATACTGGGCACTGAGATTATCCGTTGACTTGGAGCATCTAGGTTACATAAATGAGAGCCTTCAAGTGGCTGAAAACGCGTTGCTGGATCCATGGGTACGAGCTGGTTCGAGAATGGCATTGCAAAGACGTGTTCTTCGCTTAGGAAAACCACCAAGACGGTGGAAAGTTCCAAGTTTTTCTAAATCTGTACTGCGAAAGATCCCTGAGGTTTACGTTCAAGGGAGACCTTTGAATTCTGAATTGGGAGCAAAAAACAGGTTTTACAATGAAGAAGGTATGCAATGCGGAGTGGAAGAGCTTGCTTTGGATTATTACGCCACCGAGGGATGGCAAGGTGTTCATACAGAGAGTGGCATATGGTTAACTATTTTCGGGCTTCTTATGTGGGATGTAATATATGCCGATGTGCCTAATGTCTTCCATACTAGATTTCAGAATGCTCCTTTGGATTTGGGTATCGACAGCTTTTATACCACACGAGAGAGTATCATAGAATCCCATTTGCAGCAAATTCAGGATGGCATGGCTGAGGAGTTTCTTATCAAGTCATGGGAAACACATAACGGGACATCATGTAGAGGAGTTAATTGGGACCGCCATTCTTTAGACGAGCTTCGTGCTGCTGTTACTTGTGTTAGGGGCTCTTGTTTGGCATCTTTCTGCAAACTTCTTTGTGAAGACTACAGAAGCTGGTCTAGCGGAATGCCTGATTTGCTGCTATGGCGTTTCTGTGGAGAATACAGCGGGGAAGCTAAGCTTGTTGAAGTGAAAGGTCCCACGGATCGACTCTCGGAACAGCAGCGAGCATGGCTATTGATGCTTATGGATTGTGGATTCACGATCGAGGTTTGTAAAGTGAAACCTTTGTAG 2706 0.4235 MVLTGRESLSRLIGKRRRFLPNRHSILSDPIPNPNHQLSQQQQQPTTPGDGDGDNPQNDAVQCPVCSLTLPSDNHRINTHLDSCLSQPKLSGTKRKLTQRTLLQLNFTRPDPHAPDYMLPKKSQFTESPIAVKDSAVITTASSPSELNVIDTDHRDIVDNVDDECDIFEVKLETLIVGRRYAGREEVCAGDMVSLSRDSQNVKDPNAIKVVSEDSGGCSKFLGYLPRELAQYLSPIIDNYDIVFQGHVTSVPKHSRDAVPIQIMCHRTPAGERKYEDETFKCLWKNAQHVVESAIKNPSSVTYQLNFCLMIQETLKNNIHLLTEAEKTYIESFTSLSNDSQRLFIRIYTRKGPWFHISSISYPEILDTQKAVKELAEKEYICTVEDRNQLCESDMNDILDVLTVSELREILCFLLKKSCGHGMKKQDLISSILSTSAGLWPHLSNMILDKTGFCIKISSKAESLLWRIERLFFLNGEQDLSSFLLVDIGKIKYPTYTCTISEPIFSNRMDLLAFEEAIEVAQVMDEALDANKTDIVLRCIKIAESRVSAVLPIPYSASKSVSTFHHLFTASWVYSKVVTLGISFLEQERRYSDAIDLLKRLQNVFTCDVKRGYWALRLSVDLEHLGYINESLQVAENALLDPWVRAGSRMALQRRVLRLGKPPRRWKVPSFSKSVLRKIPEVYVQGRPLNSELGAKNRFYNEEGMQCGVEELALDYYATEGWQGVHTESGIWLTIFGLLMWDVIYADVPNVFHTRFQNAPLDLGIDSFYTTRESIIESHLQQIQDGMAEEFLIKSWETHNGTSCRGVNWDRHSLDELRAAVTCVRGSCLASFCKLLCEDYRSWSSGMPDLLLWRFCGEYSGEAKLVEVKGPTDRLSEQQRAWLLMLMDCGFTIEVCKVKPL 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00733 901 Pfam VRR-NUC domain 785 899 IPR014883 GO:0016788
Vifa1g00733 901 Gene3D - 841 898 IPR011856 GO:0003676
Vifa1g00733 901 ProSiteProfiles Zinc finger UBZ4-type profile. 60 89 IPR006642 GO:0003677|GO:0006281
Vifa1g00733 901 Gene3D Classic Zinc Finger 57 88 - -
Vifa1g00733 901 MobiDBLite consensus disorder prediction 28 53 - -
Vifa1g00733 901 Gene3D - 161 281 - -
Vifa1g00733 901 SMART HIRAN_2 171 267 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vifa1g00733 901 PANTHER FANCONI-ASSOCIATED NUCLEASE 1 5 900 IPR033315 GO:0004518|GO:0036297
Vifa1g00733 901 SMART c2hc_5 60 85 IPR006642 GO:0003677|GO:0006281
Vifa1g00733 901 MobiDBLite consensus disorder prediction 21 60 - -
Vifa1g00733 901 SMART VRR_NUC_a_2 783 900 IPR014883 GO:0016788
Vifa1g00733 901 Pfam HIRAN domain 172 254 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vifa1g00733 901 CDD FAN1-like 303 899 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00733 176 263 RAD5 or RAD16-like Gene Family AT5G05130 37.778 3.36e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00733 K15363 - gmx:100793881 1272.69