Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00729 ATGAAGACTTTTCACCACATTTCCTTAACACTCTTGACAACACTTCTAATCACCTCACTCTCCAATCTCCAAACTTGTTCCTCAAACAACAACAACATAAACATTCAACTAAACGACGATGTGCTCGGCCTAATGGTGTTCAAATCCGATCTCCATGACCCTTCATCTTCGCTCTCATCATGGAACGAAGATGACATGAATCCATGTTCATGGCAATACATAAAATGCAATGAACAAGGAAGAGTTTCGGAACTTTCACTAGATGGATTATCCTTATCAGGTAAAATAGGAAGAGGACTAGAAAAATTGCAACACTTACAAGTGTTGCAACTCTCTCACAACAATTTGAGTGGAACCATTAGTCCTTCACTCACACTTTCTAGCACACTTGAAAATCTAAACCTTAGTCATAACTCAATCTCGGGTCAATTACCAAACTCTTTTATTAACATGAGCTCGATCAGATTCATCGATCTCTCGTATAATTCATTCGCAGGACAGATGTTTGATGGTTTTTTCCAGGATTGTTCTTTCCTTAGACGCGTTTCTTTCGCTATGAACATGTTTGAAGGACAGATTCCTAGTACAATATCTAAATGTTCTTTGGTCAATAGCCTAGATTTTTCGAATAATCACTTTAGTGGAAATGTTGATTTTTCGAGGCTTTGGTTATTGAGTAGGCTTAGGAATTTGGATCTATCAAACAATGCTTTATCTGGAAACTTGGTTGATGGTGTTTCAAATTTGCATAACTTGAAAGAGTTGTTGCTGCAGAATAATCAGTTTTCAGGTGAATTACCAAAGGATGTTGGATTTTGTGTTCATTTGGATAGAATTGATTTTGGTAATAATCAGTTTAGTGGTGAATTGCCTGAATCATTTGGGAGATTAAGCTATTTGAGATATTTTAGGGTTTCAGATAATCACTTATTTGGTGAGTTTCCTCAATGGATTGGTAACTTGATTAGTTTGGAGCATTTCGACTTATCTAATAATCAATTCTATGGAAACATTCCTTTGTCATTGGTTTCATGCATCAAGTTATCTAAGATTTTTCTTAGAGGGAATGGTTTCAATGGTACTATACCTGAGGGCTTGTTTGGATTAGGGTTAGAGGAAATCGATTTTTCGCGTAATGGACTAATCGGTTCGGTTCCGGCTGGATCAAACAGGTTGTTGGAAACTCTTACAAAGTTGGATCTTTCGGTTAATCGGTTAAAAGGGAATGTTCCTGCTGAAATCGGGCTGCTTTCGAAGCTCAGATACTTGAATTTTTCTTGGAATGATCTTGGTTCTGAGATTCCACCGGAATTCGGTCTACTTCAGAATCTAGAGGTTTTGGATCTGCGTAATTGCGCGTTGTTTGGTTCGATTCCGAAGGATATATGTGATTCGGGAAATTTGGATGTTCTTCAGTTGGATGGAAATTCATTGAAGGGGCCTATTCCAGAAGATATTGGAAATTGTTCATCTCTTTACTTGTTGAGTTTGTCATTCAATAATTTGACAGGTTCAATCCCGAAGTCGATGTCAAATCTAAACAAGCTCAAAATCCTCAACTTGGAATTCAATGAACTTAATGGTGAGCTGCCAATGGAGCTAGGAAAGCTTCAAAATCTTCTTGCTGTGAACATATCACACAACAGCCTCACCGGAAGGCTTCCGGTCGGTAGCATATTTCAAAACTTAGACAAAAGTTCTTTGGAAGGAAACTACGGTCTTTGCTCGCCCTTGTTGAAAGGTCCATGCAAAATGAATGTTTCAAAACCTCTAGTTCTTGATCCACATGGCTTTGACAACCAAATGAATCCTCAAACACCGAGAGACGAATCGTCTGAGTCAAGTGGTTCAATTCATCACCACAGGTTCCTTAGTATTTCGGCGATTATAGCAATTGCGGCTTCTTTTGTGATTGTGTTAGGAGTTATTGCTATTAGTCTACTTAACGCTTCGGTAAGGAGAAAGCTAGCGTTTGTGGAGAATAGTTTGGAAAGCATGTGTTCGAGTTCTTCAAAATCAGGAGCACCGGCCACAGGTAAACTCGTTCTTTTTGATTCACAATCCTCGCAAGATTGGATCAGTAATCCGGAAAACTTGCTCAGCAAGGCATCTGAGATTGGTGAAGGAGTTTTCGGAACGGTTTACAAAATTCCATTAGGATCGCAACAAGGAAGAAATGTCGCAATCAAGAAGCTCGTCACGTCAAACATAATCCAATTTCCAGAAGACTTTGACAGGGAAGTTAGAATTCTAGGCAAAGCCAGACACCCGAATTTGATAGCGTTGAAAGGATACTATTGGACTCCTCAACTTCAGCTTCTAGTATCCGAATTCGCACCGAATGGTAACTTGCAATCCAAGTTACACGAAAAGCTTCCTTCAAGTCCTTCACTTTCATGGCCTAACAGATTCAAGATTTTGCTCGGAACAGCGAAGGGACTCGCACATTTGCACCATTCATTCAGGCCACCAATCATTCACTACAACATAAAACCAAGCAACATCTTACTCGACGAAAACTTCAATGCAAAGATATCCGATTTCGGGTTAGCCAGGCTTTTGACAAAGCTAGACAAGCATGTGATGAGCAACAGGTTTCAAAGTGCGTTAGGTTATGTCGCACCCGAATTAGCCTGTCAGAGCTTAAGGGTCAATGAGAAATGCGACGTGTATGGTTTTGGCGTGATGATACTCGAGTTAGTGACGGGTAGGAGGCCGGTGGAGTACGGCGAAGATAATGTGTTGATATTGAATGATCATGTGAGGGATTTGCTTGAACATGGTAATGTTTTGGAGTGTGTGGATCCGAGTATGATGAATGAATATCCTGAGGATGAGGTTTTGCCTGTTTTGAAGCTCGCAATGGTGTGTACTTCTCAAATACCGTCTAGCCGGCCTACTATGGCCGAAATTGTGCAAATATTGCAGGTCATTAAAACTCCGGTTCCTCAAAGGATGGAAGTGTTTTAA 2970 0.4003 MKTFHHISLTLLTTLLITSLSNLQTCSSNNNNINIQLNDDVLGLMVFKSDLHDPSSSLSSWNEDDMNPCSWQYIKCNEQGRVSELSLDGLSLSGKIGRGLEKLQHLQVLQLSHNNLSGTISPSLTLSSTLENLNLSHNSISGQLPNSFINMSSIRFIDLSYNSFAGQMFDGFFQDCSFLRRVSFAMNMFEGQIPSTISKCSLVNSLDFSNNHFSGNVDFSRLWLLSRLRNLDLSNNALSGNLVDGVSNLHNLKELLLQNNQFSGELPKDVGFCVHLDRIDFGNNQFSGELPESFGRLSYLRYFRVSDNHLFGEFPQWIGNLISLEHFDLSNNQFYGNIPLSLVSCIKLSKIFLRGNGFNGTIPEGLFGLGLEEIDFSRNGLIGSVPAGSNRLLETLTKLDLSVNRLKGNVPAEIGLLSKLRYLNFSWNDLGSEIPPEFGLLQNLEVLDLRNCALFGSIPKDICDSGNLDVLQLDGNSLKGPIPEDIGNCSSLYLLSLSFNNLTGSIPKSMSNLNKLKILNLEFNELNGELPMELGKLQNLLAVNISHNSLTGRLPVGSIFQNLDKSSLEGNYGLCSPLLKGPCKMNVSKPLVLDPHGFDNQMNPQTPRDESSESSGSIHHHRFLSISAIIAIAASFVIVLGVIAISLLNASVRRKLAFVENSLESMCSSSSKSGAPATGKLVLFDSQSSQDWISNPENLLSKASEIGEGVFGTVYKIPLGSQQGRNVAIKKLVTSNIIQFPEDFDREVRILGKARHPNLIALKGYYWTPQLQLLVSEFAPNGNLQSKLHEKLPSSPSLSWPNRFKILLGTAKGLAHLHHSFRPPIIHYNIKPSNILLDENFNAKISDFGLARLLTKLDKHVMSNRFQSALGYVAPELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRDLLEHGNVLECVDPSMMNEYPEDEVLPVLKLAMVCTSQIPSSRPTMAEIVQILQVIKTPVPQRMEVF 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00729 989 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 779 984 - -
Vifa1g00729 989 SUPERFAMILY Protein kinase-like (PK-like) 692 979 IPR011009 -
Vifa1g00729 989 ProSiteProfiles Leucine-rich repeat profile. 105 127 IPR001611 GO:0005515
Vifa1g00729 989 SUPERFAMILY L domain-like 55 383 - -
Vifa1g00729 989 ProSiteProfiles Protein kinase domain profile. 700 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00729 989 FunFam Leucine-rich repeat receptor-like protein kinase 37 195 - -
Vifa1g00729 989 Pfam Protein kinase domain 702 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00729 989 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 179 976 - -
Vifa1g00729 989 MobiDBLite consensus disorder prediction 596 616 - -
Vifa1g00729 989 FunFam Inactive leucine-rich repeat receptor-like protein kinase 219 316 - -
Vifa1g00729 989 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Vifa1g00729 989 SUPERFAMILY L domain-like 306 568 - -
Vifa1g00729 989 Gene3D Phosphorylase Kinase; domain 1 683 779 - -
Vifa1g00729 989 CDD STKc_IRAK 706 976 - -
Vifa1g00729 989 Gene3D Ribonuclease Inhibitor 353 589 IPR032675 -
Vifa1g00729 989 SMART LRR_typ_2 441 465 IPR003591 -
Vifa1g00729 989 SMART LRR_typ_2 321 345 IPR003591 -
Vifa1g00729 989 SMART LRR_typ_2 103 128 IPR003591 -
Vifa1g00729 989 SMART LRR_typ_2 417 440 IPR003591 -
Vifa1g00729 989 SMART LRR_typ_2 513 537 IPR003591 -
Vifa1g00729 989 SMART LRR_typ_2 225 248 IPR003591 -
Vifa1g00729 989 SMART LRR_typ_2 249 273 IPR003591 -
Vifa1g00729 989 ProSitePatterns Protein kinases ATP-binding region signature. 706 731 IPR017441 GO:0005524
Vifa1g00729 989 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 694 778 - -
Vifa1g00729 989 Pfam Leucine Rich Repeat 419 438 IPR001611 GO:0005515
Vifa1g00729 989 Pfam Leucine Rich Repeat 443 463 IPR001611 GO:0005515
Vifa1g00729 989 Gene3D Transferase(Phosphotransferase) domain 1 780 986 - -
Vifa1g00729 989 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 336 587 - -
Vifa1g00729 989 Gene3D Ribonuclease Inhibitor 274 345 IPR032675 -
Vifa1g00729 989 Gene3D Ribonuclease Inhibitor 171 273 IPR032675 -
Vifa1g00729 989 Gene3D Ribonuclease Inhibitor 38 170 IPR032675 -
Vifa1g00729 989 Pfam Leucine rich repeat 105 163 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00729 Vifa-Chr1 119758820 119762439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00729 7 986 Receptor kinase-like Gene Family AT3G28040 60.788 0.0 1172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vifa1g00729 Pkinase 9.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00729 - - pvu:PHAVU_008G017400g 1398.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00729 1 119758820 119762439 Vifa2g03486 2 1009528949 1009535166 PCT