Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00728 ATGGCAACTACAACTACTACTAGGTCTTTTCTACAAGCAGTCGCGACGGAAGAGGTTGCGACTCCTCTTAGAGTCGTTCAGATGGAAGGACTGGTTATCCTGAAGATAATTAAGCATTGTAAGGATCACTCACCTTCTTTAGTCACTGGACAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACTAACTGCTTCCCTTTTCCGATGAGGGAGGATGATGAGGAAATTGAAGCTGATGGTGCCAATTATCAGCTTGAAATGATGAGGTGCTTGAGGGAGGTTAATGTGGACAATAATACTGTTGGATGGTACCAGTCTACATTGCTTGGCTCCTATCAAACTGTGGAGCTGATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTTTGCATAATATATGACCCATCAAGGGCTGATCAAGGTGTCCTAGCTTTGAAGGCCTTGAAGCTCTCAGACTCATTCATGGAACTGTATCGCAGCAATAATTTTACTGGGGAAAAATTGAGGGAGAAAAACTTATCATGGGTGGATATCTTTGAGGAAATACCGATCAAAGTTTCAAATTCCGCCCTTATCAGCGCTTTTATGACTGAGCTGGAACCCGATACTCCAGTCACCCAGTGTGATTATGATCGCCTGCAACTGTCAACCAGTTCACTAATGGAGAGAAATATGGAATTTTTGATTGAATGCATGGATGACTTGTCACTAGAACAACAAAAGTTCCAATTCCACTATCGTAGCTTGTCTCGTCAGCAGGCTCAGCAGCAAGCATGGCTTCAGAAGAGAAGGGCGGAGAACATGTCACGCAGAGCTGCTGGGGAGGAGCCTTTGCCCGAGGAAGATCCTGCAAACCCCATTTTCAAGCCGCTCCCTGAACCATCACGGCTGGAGAGCTTCCTCATAACAAATCAAATCTCCAACTATTGCAACCAAATCAACGGGGTTGCAGGGCAAAGCTTTAACAGACTATATTTGATGAAGGCTTTGCACGAGGAATGA 1017 0.4444 MATTTTTRSFLQAVATEEVATPLRVVQMEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREDDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSYQTVELIETFMNYQENIRRCVCIIYDPSRADQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLMERNMEFLIECMDDLSLEQQKFQFHYRSLSRQQAQQQAWLQKRRAENMSRRAAGEEPLPEEDPANPIFKPLPEPSRLESFLITNQISNYCNQINGVAGQSFNRLYLMKALHEE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00728 338 Gene3D Cytidine Deaminase, domain 2 2 215 - -
Vifa1g00728 338 Pfam C-terminal region of eIF3h 145 337 IPR045810 -
Vifa1g00728 338 SMART pad1_6 25 158 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vifa1g00728 338 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 20 322 - -
Vifa1g00728 338 FunFam Eukaryotic translation initiation factor 3 subunit H 5 214 - -
Vifa1g00728 338 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 21 338 IPR027524 GO:0003743|GO:0005737|GO:0005852
Vifa1g00728 338 ProSiteProfiles MPN domain profile. 26 159 IPR037518 -
Vifa1g00728 338 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 24 127 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vifa1g00728 338 CDD MPN_eIF3h 24 287 IPR027524 GO:0003743|GO:0005737|GO:0005852
Vifa1g00728 338 MobiDBLite consensus disorder prediction 269 283 - -
Vifa1g00728 338 MobiDBLite consensus disorder prediction 265 295 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00728 89 337 Eukaryotic Initiation Factors Gene Family AT1G10840 84.739 1.10e-158 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00728 K03247 - gmx:100795273 632.869