Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00683 ATGACTCAGGCTGCTCCAGTGTTGAGTCGATACGGAACGGATTTTGTTGCGGAAGGTCGAGGTTCAGATTCGGAGTGTTTAGGTGGTTTTGAATGTTTTCTGAACATTGTGAGAGCTTTGGGGATGGGATCTTGTATATCGGAGGTAGGTGCTGGTGGTTTGCCGCCTCTGTTAACTTATTCACAGGAATTGAATGTTGATGTTGGGAAGAGGAAGAGGATAAGGGGTTCATCTACCATGGATTTTAAGGTGCCCGGGAGGATGTTCTTGAATGGGTCAAGTGATGTTGCTTCTATGTATTGTAAGCAAGGGAGAAAAGGAGTCAACCAAGATGCTATGCTTGTTTGGGAGAATTTTTGTTCAAAGGACGACACCATTTTTTGTGGTGTTTTTGATGGTCATGGACCTAATGGCCATAGGGTTGCAAAAAAAGTTAGGGATTCTTTTCCTTTAAAGCTTGGTGCACAATGGGATTTGCATCTTAAGAATGAAGATGGATTCAGTAATCAAAATGGTGCTGCCACAAGTTATAACTCTGAAGAGCAAATTAGACAGGCTAGCAAGATTATGGACAAAGAACTGAAACTGCACCGTGACATTGATTGCTTTTGCAGCGGGACTACAGCAGTTACCTTGATCAAGCAGGGGCTGAATCTTGTTATTGCAAATGTGGGGGATTCAAGAGCTGTATTGGGAACCCGAGATCATGCCGATTCTCTTATTGCTGTTCAGTTGACCATTGACCTTAAGCCTAATCTTCCAAAGGAAGAAGAGAGGATTAAGCATCGCAAAGGAAGGGTGTTTTCTCTTAAGAATGAACCGGATGTGGCTCGAGTTTGGCTACCTAACTCTGATTTCCCAGGTCTGGCTATGGCACGGGCTTTTGGAGATTTTTGCCTAAAGAACGTTGGATTGATTTCTGTTCCAGATGTCTCATATCACCGCCTTACAGAGAAGGATGAATTTGTTGTGTTAGCAACAGATGGGATTTGGGATGTTTTATCAAATGAAGAAGTTGTGGAGATTGTGGCATCTGCACCGCAGTCTACTGCTGCGCGAATACTGGTTGAGTCAGCTGTTCATGCTTGGAGGACAAAATTCCCTTTCTGTAAGGTTGATGATTGTGCTGCAGTGTGCCTCTTTCTTAATTCAGATTCAGAGTCGAAGATAGATGATACCACAGACAAGTTGATGCCAGATGCAACAACGGACCCAGTTGATCAATCATCTCTACCTAGTGAGAATGGAATTGGACCGGAGGAAGCTGAAAAACCGCAGTGA 1281 0.4372 MTQAAPVLSRYGTDFVAEGRGSDSECLGGFECFLNIVRALGMGSCISEVGAGGLPPLLTYSQELNVDVGKRKRIRGSSTMDFKVPGRMFLNGSSDVASMYCKQGRKGVNQDAMLVWENFCSKDDTIFCGVFDGHGPNGHRVAKKVRDSFPLKLGAQWDLHLKNEDGFSNQNGAATSYNSEEQIRQASKIMDKELKLHRDIDCFCSGTTAVTLIKQGLNLVIANVGDSRAVLGTRDHADSLIAVQLTIDLKPNLPKEEERIKHRKGRVFSLKNEPDVARVWLPNSDFPGLAMARAFGDFCLKNVGLISVPDVSYHRLTEKDEFVVLATDGIWDVLSNEEVVEIVASAPQSTAARILVESAVHAWRTKFPFCKVDDCAAVCLFLNSDSESKIDDTTDKLMPDATTDPVDQSSLPSENGIGPEEAEKPQ 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00683 426 CDD PP2Cc 96 382 IPR001932 -
Vifa1g00683 426 MobiDBLite consensus disorder prediction 389 426 - -
Vifa1g00683 426 SUPERFAMILY PP2C-like 95 383 IPR036457 -
Vifa1g00683 426 Gene3D - 92 385 IPR036457 -
Vifa1g00683 426 SMART PP2C_4 90 380 IPR001932 -
Vifa1g00683 426 ProSiteProfiles PPM-type phosphatase domain profile. 96 382 IPR001932 -
Vifa1g00683 426 Pfam Protein phosphatase 2C 102 349 IPR001932 -
Vifa1g00683 426 PANTHER PROTEIN PHOSPHATASE 94 380 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00683 Vifa-Chr1 116143636 116147193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00683 83 386 PP2C-type Phosphatase Gene Family AT1G16220 58.683 2.48e-135 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00683 - - gmx:100810538 681.404