Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00679 ATGGCATTCCCTCCCGATGAAACCGTCGGAGGACTCGCCACCGAAGAAGACACCACCATTGACATCCACACCACCCACGGCACTCCCATCCGCTACCTCCCTCTCGATCATCTCTACTCCTCCACATCCCCTTGCAGCGGCTCCTCCAACGTCATGTCCAAAAAAGTTAAAGCTCGTAAACTCAACCTAACTACCACCACCACCACCAACAACAACAACAACCACAATAACAGCGACAACGATAATAATAACCTCCACTTCAATGGTGAAATCGAAATCGAAATTGATTATCCAATCGATGATAAGAAAACCACGTCTACGTCTATGGTGGTTTACACTAAACCTAAACCACCGCTTTTATATGTTTACTCTCGGAGAAGAAAGAGAAGCTCATTTCCGGTGTCGTTTCACGATTCGTTGTTGATGAGACGGGAGGAGATGGATGCTGAGAGGAATGTGTTGTTGAAGAGGAGGAGAATTGGGAGTACTGAATTGGAGAGGTTAGGGGTTGATTGGAATGCGTTGGGGAAAATTGATGGACCGAGGTTGAGGGAATGTAGGAATCCGATTGGGAATTCTGGTGTTGATGGGAGTAATAATAATAGTAATAACAAGTGTGGTTCTGTTGTTAAGGTTCCTAAGTTGGCGCCGGAGTCCTACTCGCTGAAGAGATGGGTCACGCTGAGTTTTGATGGTGCCGATCCCAAGGCTTTTGTTGGACTGAAATGCAAGGTTTACTGGCCCATGGATTCAAAGTCATACACTGGCCATGTCAAAAGTTATGACAGGGAAGCCAATATACATCATATCGAGTATGATGATGGAGATGAGGAAAATTTAACTCTTTCAAAAGAAAATGTAAAATACCATGTTTCTCGAAATGACATGGAACGCTTAAAATTGAGTTACGCCAAAGTTCGTGACAGTAATGTCTCTGATTATGATGTTGAAGAGATGCTCGCACTGGCTGCAAGCATGGATGATTGCCAAGACTTTGAGGCCGGGGATATCATATGGGCCAAGCTGACAGGTTATGCAATGTGGCCTGCTGTTGTCCTGGATGAATCACTTGCTAGCAGCTGTAAGGGTTTAAAAACGTTCATAGGGGGGAGATCGGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGAGTTCGACTGCAACAGGTGAAATCATTTCTCAATGGACTTCTAACCGATCTACACTCAAAGTGCAAGAAACAGAGTTTCATCGATGGTTTAGAAGAGGCAAAAAGGTATTTAAGTGCACAAAAGCTTCCTTTGGAGATGATAGAACTGCGGAAAAGATGTACAGCTGATAACCATAACAATATAAGGGGAGAGAATGGAGGATGTACAGATTCGGGTGAAGACTGTGTAAATGACAAAGGGACTTGGGCAGCACTTCAAAACATTGATACTTTTCCTTATGAAGTGGGAGACTTGCAAATTCTAAGCCTTGGAAAAATAGTTGGAGATTCCACTGCTTTTAGGGATGGAAAATCCATCTGGCCCGAAGGATACACTGCAGTGCGGAAATTCACTTCAGTTACTGACCCTAAAGTATCTGTCCCTTATAAGATGGAGGTTTTGAGAGATCCCGAATCCAGAGTCAGACCATTATTTAGAGTGACAGTTGATGGTGGTGAGCAGTTCAATGGCTATACGCCATCTACTTGCTGGAATCAAATATACGAAAGGGTAAAGAAATTGGAAAAGGTTGTTTCTGAAAGTTCCGTTGCTGATGGTGACAAAGAAAGTGTCTACGAATCTGGCTCTGATATGTTTGGTTTTTCCAATTCTAAAGTGGTTAAACTTATTAAGGGATTATCTAAGTCCAAAGTCTCTTTGAAGAAATCAATTTGCAAGTCAGGTTCTGGATTGCCTCTTGGTTATAGACAAGTTCATATTAATTGGTTTGATCTCGATAAGTGCAATGTGTGCCATATGGACGAGGAGTATGAGACCAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTATGGAGAACTGGAACCTGTAAATGGGGTGCTATGGTTATGCAAATTATGTCGTTCGGGTGCTCCTCCCCCTCCATGTTGCTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACTACAGATGGCCGGTGGGCTCATTTGGCTTGTGCGATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAACCTATCGATGGTTTGAGTAGAATCAGTAAGGACCGTTGGAAATTGTTATGCAGCATATGTGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAACAATTCTTGTCGAGTAGCGTATCATCCACTCTGTGCACGTGCAGCTGGTCTTTGTGTTGAGCTTGAGAACGAGGACAGGCTCCATCTACTATCCCTAGATGATGATGAGGATCAGTGCATTCGCTTACTTTCTTTTTGCAAGAGACATAGGCAGCCATCTCATGAACATTCTGTAGCCGATGAACGTGTTCAGGTTATTGGTCAATGTTCAGATTATAAACCACCACCCACTTCATCTGGTTGTGCCCGAAGTGAGCCATATGATTACTCTGGTCGGAGAGGCCGAAAAGAACCTGAAGTACTTGCAGCTTCTTCGCTGAAACGTTTGTTTGTGGAGAATCAACCATATTTAGTTGGTGGATACTGCCAACATGGATTGTTGAACGACCTAGAGCCTTCTGGCAGAGGAGTTTGCTCTAAATTCTTTTGTAGCGAGCAAAGGCTAAGAACGTCGATGGTTGATTCTGCAGACAACATACTTAGTGTTCCTGAGAAATATAAGTACATGAAGGAAACTTTCCGGAAGCAGTTGGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGTGGAGACATGGTGATTGAATATACCGGTGAACTTGTTAGACCTCCCATTGCTGATCGAAGAGAGCGTTTTATATACAATTCTTTGGTGGGTGCTGGAACATATTTGTTTCGTGTTGATGATGCAAGAGTCATTGATGCCACCAGAGCAGGAAGCATCGCTCATTTAATTAATCATTCCTGTGCACCAAATTGCTATTCAAGAGTCATTAGTGTTAACGGTGACGAGCATATTATAATATTTGCAAAGAGGGACATTAACCAATGGGAAGAGCTTACATATGATTATAGATTTTTCTCAATAGATGAGCGGCTTGCTTGTTACTGTGGCTTCCCAAAATGTCGAGGTGTAGTAAATGATACGGAGGCAGAAGAGCGAGCTGCTACCATATATGCACCGCGGAGTGAATTAGTAGATTGGAAAGGAGAATGA 3333 0.4314 MAFPPDETVGGLATEEDTTIDIHTTHGTPIRYLPLDHLYSSTSPCSGSSNVMSKKVKARKLNLTTTTTTNNNNNHNNSDNDNNNLHFNGEIEIEIDYPIDDKKTTSTSMVVYTKPKPPLLYVYSRRRKRSSFPVSFHDSLLMRREEMDAERNVLLKRRRIGSTELERLGVDWNALGKIDGPRLRECRNPIGNSGVDGSNNNSNNKCGSVVKVPKLAPESYSLKRWVTLSFDGADPKAFVGLKCKVYWPMDSKSYTGHVKSYDREANIHHIEYDDGDEENLTLSKENVKYHVSRNDMERLKLSYAKVRDSNVSDYDVEEMLALAASMDDCQDFEAGDIIWAKLTGYAMWPAVVLDESLASSCKGLKTFIGGRSVPVQFFGTHDFARVRLQQVKSFLNGLLTDLHSKCKKQSFIDGLEEAKRYLSAQKLPLEMIELRKRCTADNHNNIRGENGGCTDSGEDCVNDKGTWAALQNIDTFPYEVGDLQILSLGKIVGDSTAFRDGKSIWPEGYTAVRKFTSVTDPKVSVPYKMEVLRDPESRVRPLFRVTVDGGEQFNGYTPSTCWNQIYERVKKLEKVVSESSVADGDKESVYESGSDMFGFSNSKVVKLIKGLSKSKVSLKKSICKSGSGLPLGYRQVHINWFDLDKCNVCHMDEEYETNLFLQCDKCRMMVHARCYGELEPVNGVLWLCKLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLHLLSLDDDEDQCIRLLSFCKRHRQPSHEHSVADERVQVIGQCSDYKPPPTSSGCARSEPYDYSGRRGRKEPEVLAASSLKRLFVENQPYLVGGYCQHGLLNDLEPSGRGVCSKFFCSEQRLRTSMVDSADNILSVPEKYKYMKETFRKQLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPPIADRRERFIYNSLVGAGTYLFRVDDARVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDINQWEELTYDYRFFSIDERLACYCGFPKCRGVVNDTEAEERAATIYAPRSELVDWKGE 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00679 1110 ProSitePatterns Zinc finger PHD-type signature. 646 691 IPR019786 -
Vifa1g00679 1110 ProSiteProfiles Post-SET domain profile. 1070 1086 IPR003616 -
Vifa1g00679 1110 SMART PWWP_4 332 395 IPR000313 -
Vifa1g00679 1110 SMART fyrc_3 542 626 IPR003889 GO:0005634
Vifa1g00679 1110 ProSiteProfiles Extended PHD (ePHD) domain profile. 697 821 IPR034732 -
Vifa1g00679 1110 ProSiteProfiles SET domain profile. 946 1064 IPR001214 GO:0005515
Vifa1g00679 1110 MobiDBLite consensus disorder prediction 845 864 - -
Vifa1g00679 1110 ProSiteProfiles FYR domain FYRN motif profile. 475 534 IPR003888 GO:0005634
Vifa1g00679 1110 ProSiteProfiles Zinc finger PHD-type profile. 643 694 IPR019787 -
Vifa1g00679 1110 SUPERFAMILY FYVE/PHD zinc finger 637 707 IPR011011 -
Vifa1g00679 1110 Pfam SET domain 957 1063 IPR001214 GO:0005515
Vifa1g00679 1110 CDD ePHD_ATX1_2_like 706 820 IPR041956 -
Vifa1g00679 1110 CDD SET_SETD1-like 933 1082 - -
Vifa1g00679 1110 SMART set_7 946 1070 IPR001214 GO:0005515
Vifa1g00679 1110 Pfam PWWP domain 335 422 IPR000313 -
Vifa1g00679 1110 SMART fyrn_3 490 534 IPR003888 GO:0005634
Vifa1g00679 1110 ProSiteProfiles FYR domain FYRC motif profile. 538 624 IPR003889 GO:0005634
Vifa1g00679 1110 SUPERFAMILY SET domain 943 1083 IPR046341 -
Vifa1g00679 1110 Pfam F/Y rich C-terminus 540 613 IPR003889 GO:0005634
Vifa1g00679 1110 CDD PWWP_AtATX1-like 335 428 - -
Vifa1g00679 1110 CDD PHD_ATX1_2_like 645 691 IPR042010 -
Vifa1g00679 1110 Pfam PHD-zinc-finger like domain 699 820 - -
Vifa1g00679 1110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 694 IPR013083 -
Vifa1g00679 1110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 823 IPR013083 -
Vifa1g00679 1110 CDD Tudor_Agenet_AtEML-like 239 289 - -
Vifa1g00679 1110 Gene3D - 234 292 - -
Vifa1g00679 1110 Gene3D SET domain 908 1099 IPR046341 -
Vifa1g00679 1110 PANTHER PHD FINGER PROTEINS 42 1093 - -
Vifa1g00679 1110 Gene3D - 322 431 - -
Vifa1g00679 1110 SMART PHD_3 645 692 IPR001965 -
Vifa1g00679 1110 SMART PHD_3 755 821 IPR001965 -
Vifa1g00679 1110 SMART PostSET_3 1070 1086 IPR003616 -
Vifa1g00679 1110 SUPERFAMILY Tudor/PWWP/MBT 328 429 - -
Vifa1g00679 1110 FunFam Histone-lysine N-methyltransferase 879 1103 - -
Vifa1g00679 1110 Pfam F/Y-rich N-terminus 481 531 IPR003888 GO:0005634
Vifa1g00679 1110 Gene3D - 476 616 - -
Vifa1g00679 1110 ProSiteProfiles PWWP domain profile. 334 397 IPR000313 -
Vifa1g00679 1110 FunFam Histone-lysine N-methyltransferase 695 823 - -
Vifa1g00679 1110 Pfam PHD-finger 657 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00679 Vifa-Chr1 114357807 114368712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00679 626 791 C2H2 Transcription Factor Family AT3G14740 38.596 5.58e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa1g00679 zf-HC5HC2H_2 5.4e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00679 - - gmx:100808923 1748.02