Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00674 ATGACCATGGTTCCTTCTCAAACCAACAAAACTAATAGTGATTATGTTTTCTACAACAATACAACAAGTGATATGAACCACTTTCAATTTGTTGAAGATTACAACAACTACAATAACTGTTTAAGATCTGAATTTTTGTTCAAGCACATGGCTGAAGAAGAATCCTTTTCAAGACTCAACACTCGTTATAATAACGAACCCGAACCCGAACTCGAACCTGAACCCGAACTAGAAACTATTTCTACCTCAAAGGAAAACGAAGAACAAGAAAGAGAATCAAACAACAACAATAACACCAACAACTGGCTTCAATTAAGCATAGGTAACACCGTCCTGACATCAACAACTACAAAACATGACGTTGATGTTGATCACAGTCAAGCTCCAACAAACAGTTCATGTCAGTTGGAGCTTGAACTGTTACCAACAAATTGGACTTCATCAAGGTCTGACTTAGAGCAACCTTCGACTAAAGATTGCTCTATGTTTTTCGAGCAAACAACTCCGTCTTCTTCTTCATCGTCCATGTCCATGTCCATGTCCATGTCCATGCCGGCCGGTCCATCTTATAGCCATCAACAGCATCTAGTCCCACATAACTGGGCATTTGGTCCATTACTACCACATTCTATGGCAATCATGGCTCCTTCTACATCTTATATCCCATCTTCTTCTTCTTCTTTTTCTTCGTCGCAATCTTGTTCGTCTTTAAGACCTTCTTTAGGACCTAATTATTATCCTCAATATCATCATGCATCACCTTTTCATTTCCCTTCATCTTCTTCTTCTTCTGGATTTGATCAATTTGATATTGCTGGACCTAGCTCATCATCTCATCTCACTTTTCGCGTCGTCGATCCTCCTCGTCGACCTCATTCCGGAATTTGGTTTATGCTACAAGCCTCACAAAATCAAGTGAAAGAACCATTTTTGCCTCAAATACCTAAGAATTATCTTAGAATCAAAGATGGAAGAATGACAGTTAGGTTGCTAATGAAGTATCTGGTTAACAAACTCAAATTGGAGAACGAATCAGAGATAGAGATAACATGCAAAGGACAACAACTTTTACCTTTCTTGACGTTGCAACATGTGAGGGATAATATTTGGACACCAAGGGACACAACAACAACAACAACAAGACCTTTGCTTTCAGATTCCTCAACAACAGATCATGTAATGGTGCTTCATTACTCTAGAAGCACTTCTTAG 1212 0.3886 MTMVPSQTNKTNSDYVFYNNTTSDMNHFQFVEDYNNYNNCLRSEFLFKHMAEEESFSRLNTRYNNEPEPELEPEPELETISTSKENEEQERESNNNNNTNNWLQLSIGNTVLTSTTTKHDVDVDHSQAPTNSSCQLELELLPTNWTSSRSDLEQPSTKDCSMFFEQTTPSSSSSSMSMSMSMSMPAGPSYSHQQHLVPHNWAFGPLLPHSMAIMAPSTSYIPSSSSSFSSSQSCSSLRPSLGPNYYPQYHHASPFHFPSSSSSSGFDQFDIAGPSSSSHLTFRVVDPPRRPHSGIWFMLQASQNQVKEPFLPQIPKNYLRIKDGRMTVRLLMKYLVNKLKLENESEIEITCKGQQLLPFLTLQHVRDNIWTPRDTTTTTTRPLLSDSSTTDHVMVLHYSRSTS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00674 403 Gene3D - 289 381 - -
Vifa1g00674 403 MobiDBLite consensus disorder prediction 77 92 - -
Vifa1g00674 403 MobiDBLite consensus disorder prediction 58 103 - -
Vifa1g00674 403 PANTHER RING FINGER PROTEIN 1 401 IPR044171 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00674 Vifa-Chr1 112278640 112289950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00674 308 399 C3H Transcription Factor Family AT3G23060 35.870 9.68e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00674 - - lja:Lj1g3v3138970.1 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00674 1 112278640 112289950 Vifa1g00674 1 112278640 112289950 ECH