Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00666 ATGAACTCAAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCAGCACCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGCCGTGGCATATCGACAAATGTCATTATTGTTACGTCGACCACCAGGCCGTGAGGCTTTCCCAGGCAATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCAAAACGGTCGGACCAGACAGGCGCAGGTAGCTTGACCGCCTTACTCGTCATTGAAACACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTTATCTCCATTACGGATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGTAGTTTAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGCTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAACCACAATATGCACCACTTCCAATTGAAAAACAAATTCTAGTAATTTATGCAGCTGTCAATGGATTATGTGATCGAATGCCATTAGACAAAATAGCTCAATATGAAAGAGACATTCTAAGCACTATAAAACAAGAATTACTACAATCACTAAAAGGTGGACTAACTGGCGAAAGAAAGATAGAACCGGATGCATTCTTAAAAGAAAAAGCTTTGTCCTTAATTTAA 954 0.4319 MNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGNVFYLHSRLLERAAKRSDQTGAGSLTALLVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGLCDRMPLDKIAQYERDILSTIKQELLQSLKGGLTGERKIEPDAFLKEKALSLI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00666 317 FunFam ATP synthase subunit alpha, mitochondrial 1 192 - -
Vifa1g00666 317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 191 IPR027417 -
Vifa1g00666 317 Gene3D - 1 192 IPR027417 -
Vifa1g00666 317 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 7 185 IPR000194 GO:0005524
Vifa1g00666 317 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 194 293 - -
Vifa1g00666 317 ProSitePatterns ATP synthase alpha and beta subunits signature. 176 185 IPR020003 GO:0005524
Vifa1g00666 317 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 1 313 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa1g00666 317 Gene3D - 193 312 IPR038376 -
Vifa1g00666 317 FunFam ATP synthase subunit alpha 193 316 - -
Vifa1g00666 317 NCBIfam F0F1 ATP synthase subunit alpha 9 293 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa1g00666 317 Pfam ATP synthase alpha/beta chain, C terminal domain 192 289 IPR000793 GO:0015986
Vifa1g00666 317 CDD ATP-synt_F1_alpha_C 196 294 IPR000793 GO:0015986
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00666 Vifa-Chr1 111161401 111162354 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00666 8 198 Primary Pumps ATPases(2) AT4G38510 28.125 3.00e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00666 K02132 - gmx:15308624 581.252