Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00654 ATGTCTTCTATACTATGTTGTTCCATTGCAATGTGTGTTGCAATTTTCCTCCACCTATGTTCCTGTGCAGTGTCACACCCTAATAAGATCAATCATTTACCAGGTCAACCTCATGTTGAGTTTAACCAGTTTTCAGGTTATGTTAATGTTGATAACAGAAACAAAAAATCACTCTTTTTCTACTTTGTTGAAGCTCAGAATTATGCTGCTTCTAAACCTCTTGTTCTCTGGCTCAATGGAGGGCCTGGTTGTTCTTCTCTTGGTGTTGGTGCATTTTCGGAAAATGGTCCTTTTAGGCCTAAAGGACAGGCTTTGGTTAGGAACCAATTCAGCTGGAATACAGAAGCAAATATGTTGTACTTGGAATCACCAATCGGAGTAGGATTTTCTTATTCAAATGATACTTCATCTTATGAAGGTGTAAATGACAAGATTACAGCCAGGGATAATCTAATCTTCTTGCAAAACTGGTTTATAAAGTTTCCAGAATACAGAAACAGAAGTTTGTTCATTGTAGGAGAGAGCTATGCTGGTCATTATGTTCCTCAACTGGCTGAACTTATGCTTCAATTCAACAAAAAGGAGAAGCTGTTCAATTTAAAAGGCATTGCTCTTGGCAATCCAGTACTAGAATACGCAACAGATTTTAATTCAAGAGCCGAGTTCTTTTGGTCACATGGATTGATATCAGACTCAACATTCAAAATGTTCACTTCTGTTTGTAACTACTCAAGATATGTGAGAGAGTACTATAACGGCGCAGTTTCTCCTCTTTGTTCGAGTGTGATGAGTCGAGTTACTACAGAAACAAGTAGATTTGTCGACAAGTATGATGTTACACTCGACGTTTGTATATCTTCTGTGTTTTCACAAACCAAAGTCCTCAATCCCGAGCAAGGGACAGAAACAATTGATGTATGTGTGGAAGACGAAACGCTCAACTATCTTAACAGAAAAGATGTTCAATCGGCTTTACAGGCGCGTCTAGTCGGGACACAAAGATGGTCTCCTTGTAGCAATGTCTTGGATTATGAATTGCACGACTTGGAGATACCGACGATCACTGTCGTAGGCAAGCTAGTCAAGGCAGGAATACCAGTATTGGTCTATAGTGGTGATCAGGATTCGGTCATTCCATTGATTGGAAGTAGAACTTTAGTAGATCGATTGGCGAAAACACTGAGAATCAATACCACTGTGCCATACCGGGTGTGGTTTGAAAGGCAGCAGGTTGGTGGTTGGACTCAGGTTTATGGTAACATACTATCATTTGCAACAGTCAGAGGAGCATCACATGAAGCACCCTTTTCACAACCTGAGAGATCACTTGTGTTGTTCAAGTCCTTCTTGGAAGGAAAACCTCTACCAGAAGAATTTTGA 1380 0.4007 MSSILCCSIAMCVAIFLHLCSCAVSHPNKINHLPGQPHVEFNQFSGYVNVDNRNKKSLFFYFVEAQNYAASKPLVLWLNGGPGCSSLGVGAFSENGPFRPKGQALVRNQFSWNTEANMLYLESPIGVGFSYSNDTSSYEGVNDKITARDNLIFLQNWFIKFPEYRNRSLFIVGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDSTFKMFTSVCNYSRYVREYYNGAVSPLCSSVMSRVTTETSRFVDKYDVTLDVCISSVFSQTKVLNPEQGTETIDVCVEDETLNYLNRKDVQSALQARLVGTQRWSPCSNVLDYELHDLEIPTITVVGKLVKAGIPVLVYSGDQDSVIPLIGSRTLVDRLAKTLRINTTVPYRVWFERQQVGGWTQVYGNILSFATVRGASHEAPFSQPERSLVLFKSFLEGKPLPEEF 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00654 459 ProSitePatterns Serine carboxypeptidases, serine active site. 171 178 IPR018202 GO:0004185
Vifa1g00654 459 FunFam Carboxypeptidase 23 456 - -
Vifa1g00654 459 Gene3D alpha/beta hydrolase 23 457 IPR029058 -
Vifa1g00654 459 FunFam Carboxypeptidase 353 452 - -
Vifa1g00654 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 131 IPR001563 GO:0004185|GO:0006508
Vifa1g00654 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 422 435 IPR001563 GO:0004185|GO:0006508
Vifa1g00654 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 182 IPR001563 GO:0004185|GO:0006508
Vifa1g00654 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 108 120 IPR001563 GO:0004185|GO:0006508
Vifa1g00654 459 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 439 IPR001563 GO:0004185|GO:0006508
Vifa1g00654 459 SUPERFAMILY alpha/beta-Hydrolases 31 456 IPR029058 -
Vifa1g00654 459 Pfam Serine carboxypeptidase 35 452 IPR001563 GO:0004185|GO:0006508
Vifa1g00654 459 ProSitePatterns Serine carboxypeptidases, histidine active site. 422 439 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00654 Vifa-Chr1 110921930 110925131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00654 315 455 Calmodulin-binding Proteins AT2G22960 27.660 4.35e-15 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00654 1 110921930 110925131 Vifa1g00654 1 110921930 110925131 ECH