Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00646 ATGCTAGGGCGTGTGGTCGACGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATAGAACCTATAGTTATCGATACCATATTAAACCAAAAGCAAATGAACTCAAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCAGCACCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGCCGTGGCATATCGACAAATGTCATTATTGTTACGTCGACCACCAGGCCGTGAGGCTTTCCCAGGCGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCAAAACGGTCGGACCAGACAGGCGCAGGTAGCTTGACCGCCTTACTCGTCATTGAAACACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTTATCTCCATTACGGATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGTAGTTTAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGCTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAACCACAATATGCACCACTTCCAATTGAAAAACAAATTCTAGTAATTTATGCAGCTGTCAATGGATTCTGTGATCGAATGCCATTAGACAAAATAGCTCAATATGAAAGAGACATTCTAAGCACTATAAAACAAGAATTACTACAATCACTAAAAGGTGGACTAACTGGAGAAAGAAAGATAGAACCGGATGCATTCTTAAAAGAAAAAGCTTTGTCCTTAATTTAA 1098 0.439 MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIEPIVIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALLVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDKIAQYERDILSTIKQELLQSLKGGLTGERKIEPDAFLKEKALSLI 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00646 365 CDD ATP-synt_F1_alpha_C 244 342 IPR000793 GO:0015986
Vifa1g00646 365 Gene3D - 241 360 IPR038376 -
Vifa1g00646 365 ProSitePatterns ATP synthase alpha and beta subunits signature. 224 233 IPR020003 GO:0005524
Vifa1g00646 365 Gene3D - 1 40 - -
Vifa1g00646 365 Gene3D - 41 240 IPR027417 -
Vifa1g00646 365 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 52 233 IPR000194 GO:0005524
Vifa1g00646 365 Pfam ATP synthase alpha/beta chain, C terminal domain 240 337 IPR000793 GO:0015986
Vifa1g00646 365 NCBIfam F0F1 ATP synthase subunit alpha 38 341 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa1g00646 365 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 38 361 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa1g00646 365 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 242 341 - -
Vifa1g00646 365 FunFam ATP synthase subunit alpha 241 363 - -
Vifa1g00646 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 239 IPR027417 -
Vifa1g00646 365 CDD F1-ATPase_alpha_CD 1 236 IPR033732 GO:0032559
Vifa1g00646 365 FunFam ATP synthase subunit alpha, mitochondrial 36 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00646 Vifa-Chr1 110129971 110131182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00646 46 246 Primary Pumps ATPases(2) AT4G38510 27.723 4.35e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00646 K02132 - gmx:15308624 654.055