Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00634 ATGGTTTCTGGTCTCTCTCAAGTCAATGGAAGTTCTAATAACAATAATCCACACATGGCACAACCAACTTCAAGTACTATTATCAATAGAGAATCTCAACCTCATGTAGATCAAGTTGAAGAAGTAAAAAAGAAACCTCACTTTAGAGGAGTGCGACAAAGACCATGGGGAAAATGGGCAGCAGAAATACGTGACCCAATAAAAGCAGCTAGAGTTTGGCTAGGAACATTTGATACAGCTGAAGATGCAGCTCTTGCATATGACAAAGCAGCACTCAAATTCAAAGGCACAAAAGCTAAACTCAATTTCCCCGAAAGAGTTGTTCAATGCAGCAACAATAATAATTCTAGTAGTGCAGTTCAGCAAAGTGGTTATTCTGTTGATAATCAACAAGTTTTTCCAAATTTGTTTCAATATGCTCAGATTCTCTCTAGTGATGCCGAGTTTCCTTATTATGCATCTCATCTTTTCAATCAAGATCAACAACATGGAGATGATGTTCATCGTCCACCTGGCCAGTAG 522 0.3851 MVSGLSQVNGSSNNNNPHMAQPTSSTIINRESQPHVDQVEEVKKKPHFRGVRQRPWGKWAAEIRDPIKAARVWLGTFDTAEDAALAYDKAALKFKGTKAKLNFPERVVQCSNNNNSSSAVQQSGYSVDNQQVFPNLFQYAQILSSDAEFPYYASHLFNQDQQHGDDVHRPPGQ 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00634 173 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Vifa1g00634 173 PANTHER DNA-BINDING DOMAIN 24 128 IPR044808 GO:0003700|GO:0009873
Vifa1g00634 173 CDD AP2 46 105 IPR001471 GO:0003700|GO:0006355
Vifa1g00634 173 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Vifa1g00634 173 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Vifa1g00634 173 FunFam Ethylene-responsive transcription factor 2 46 105 - -
Vifa1g00634 173 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677
Vifa1g00634 173 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g00634 173 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Vifa1g00634 173 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Vifa1g00634 173 Pfam AP2 domain 46 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00634 Vifa-Chr1 109940086 109941927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00634 1 157 AP2-EREBP Transcription Factor Family AT5G13330 48.571 1.10e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g00634 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00634 - - mtr:11443305 234.572