Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00631 ATGCAATTCGCTAAGCTTGATGATTCTCCTATGTTCCGCAAGCAGATACAATGCATGGAGGAAAGTGCTGAATCTTTGAGAGAGAGAAGTTTGAAATTTTACAAGGGATGCAGAAAATACACGGAAGGACTTGGGGAGGCATATGATGGAGATATTGCATTTGCAAGTGCCCTAGAAACTTTTGGTGGGGGTCATAATGACCCCATCAGTGTAGCTTTTGGAGGCCCTGTTATGACCAAATTCACTATAGCCTTGAGAGAAATTGGGACATACAAGGAAGTCCTTCGATCACAGGTTGAGCACATGTTAAATGACAGATTGCTCCAGTTTGTCAATATTGATCTGCAAGAGGTCAAGGAAGCACGAAAACGCTTTGACAAAGCCAGCCTTATTTATGACCAGACTCGTGAAAAGTTTCTGTCACTGAGAAAAGGTACAAAAACTGATGTAGCTCATGCCCTAGAAGAGGAGCTTCATAGTGCAAGAGCTACATTTGAGCAAACTCGGTTTAATTTGGTTACTGCCCTGTCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCTCATCTTCGTTACTTCAAACAGGGGTATGAACTATTGCATCAAATGGAGCCATACATTAACCAGGTTTTGACTTATGCTCAACAATCAAGAGAAAGGTCCAATTATGAGCAAGCAGCTCTCAATGAAAGAATGCAAGATTACAAACGGCAGATTGATCGAGAAAGTAGGTGGGCTTCTAATGGTTCTAATGGTTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAAGCAGTAATGCAAAATGCTGCAAAGGGAAAGGTTCAGACTATTCGACAAGGATATCTCTCGAAGCGTTCCTCAAACTTAAGGGGGGACTGGAAAAGGAGGTTTTTCGTTCTTGATAGCCGGGGAATGCTCTATTACTACCGTAAACAAATCAGCAAATCATCTGGGTCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCAGAGCTTGGTTCTGGACTTCTAAGTCGATGGTTGTCTTCTCATCATCATCATCATCATGGTGGAGTACATGATGAGAAATCTGTTGCTCATCACACTGTGAACCTGCTTACATCGACAATCAAAGTTGATGCTGACCAATCGGATTTGAGGTTTTGCTTCAGGATCATTTCACCGACAAAGAATTACACTTTGCAGGCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAAATCACAGGTGTTATTGCCTCATTGCTAAGTTCTCAGATTCCTGAAAGGTTGTTATCGGCAAGTCCAATGGGAAGTGGTCATCATAGGTCTACAAGTGAGAGCAGTTCTTTTGAAAGTTCAGATTTTGATCACTCTGCTGTTGAAGAAAGTGCAGCTGATAGAAGTTTTGCATCTTCACATCTGGAGCGTGCCTCCAGAAGTTTGAACCAGCAGCGATCCTGTAATAAAAGTGAGAAACCAATTGATGTGTTGCGAAGAGTTATTGGGAATGATAAATGTGCTGATTGTGGGGCTCCCGAACCTGATTGGGCGTCACTAAATCTTGGCGTTCTTGTTTGCATTGAATGTTCTGGTGTTCATCGAAACCTCGGTGTGCACATATCCAAGGTCCGCTCTCTTACGTTGGACGTTAAGGTGTGGGAACCTTCTGTGATAAGTTTATTTCAGTCGCTTGGGAATGCTTTTGCCAACTCAGTCTGGGAGGAACTTTTGCAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAGGCTCGAGCAAGTCCGATAAACCACAGACGGTTTTCATCACCAAACCCGGTCAATATGATTCTCTATCGGTGAAGGAAAAGTTCATACATGCAAAGTATGCGGAGAAGATTTTTGTTCGCAAGCCGAAAGAGAATCAGTACCAACTTCTAGTGGCACAACAGATCTGGGAGGCTGTTCGTGCTAATGACAAAAAAGCTGTGTACTGCTACATTGTTAATTCCGACGTTGATGTCAATGTTGTTTATGAGCAAGCATGCAACAACTCTTTAACCCTTGCCAAAGTCATGCTATTACAAGAGCAGGCAAACCATGATCAGGGCTCTAATTTAACAGGGAACACATTGGACTGGTCCTCTAATTGCTCTTTGAGTTTGGCGGGCACTAAAGAAGGCCAGACAATGGACAATCTCGAAGGTTGCACACTACTTCACATTGCTTGTGAAACTGCGGACATTGGAATGGTGGAGCTCCTTCTGCAATATGGTGCTAATATTAATGCAAGCGATTTGAGAGGCAGAACTCCTTTACATCGCTGTATTCTCAAAGGAAGATCTATAATTGCAAGATTACTTCTTTCGAGGGGAGGCGATCCTCGAGCTGTGGATGAGGAGGGAAGAACGCCTATTGAGCTTGCTGCAGAATCAAATGCTGATGAAAGACAAGTCCATGCACCATCTACTGATTCAAATGGATGA 2502 0.4293 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTREKFLSLRKGTKTDVAHALEEELHSARATFEQTRFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQDYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQNAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQISKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERLLSASPMGSGHHRSTSESSSFESSDFDHSAVEESAADRSFASSHLERASRSLNQQRSCNKSEKPIDVLRRVIGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNAFANSVWEELLQSRSAFQVDLVPTGSSKSDKPQTVFITKPGQYDSLSVKEKFIHAKYAEKIFVRKPKENQYQLLVAQQIWEAVRANDKKAVYCYIVNSDVDVNVVYEQACNNSLTLAKVMLLQEQANHDQGSNLTGNTLDWSSNCSLSLAGTKEGQTMDNLEGCTLLHIACETADIGMVELLLQYGANINASDLRGRTPLHRCILKGRSIIARLLLSRGGDPRAVDEEGRTPIELAAESNADERQVHAPSTDSNG 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00631 833 Gene3D - 647 822 IPR036770 -
Vifa1g00631 833 Gene3D - 285 441 IPR011993 -
Vifa1g00631 833 MobiDBLite consensus disorder prediction 444 466 - -
Vifa1g00631 833 MobiDBLite consensus disorder prediction 799 833 - -
Vifa1g00631 833 MobiDBLite consensus disorder prediction 253 269 - -
Vifa1g00631 833 SMART PH_update 293 433 IPR001849 -
Vifa1g00631 833 SMART ANK_2a 773 802 IPR002110 GO:0005515
Vifa1g00631 833 SMART ANK_2a 740 769 IPR002110 GO:0005515
Vifa1g00631 833 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Vifa1g00631 833 ProSiteProfiles ARF GTPase-activating proteins domain profile. 503 648 IPR001164 GO:0005096
Vifa1g00631 833 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Vifa1g00631 833 SUPERFAMILY Ankyrin repeat 658 819 IPR036770 -
Vifa1g00631 833 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Vifa1g00631 833 PANTHER CENTAURIN/ARF 3 826 IPR045258 GO:0005096
Vifa1g00631 833 ProSiteProfiles PH domain profile. 292 431 IPR001849 -
Vifa1g00631 833 CDD BAR_SFC_plant 14 215 IPR035670 -
Vifa1g00631 833 ProSiteProfiles Ankyrin repeat profile. 740 772 IPR002110 GO:0005515
Vifa1g00631 833 PRINTS HIV Rev interacting protein signature 557 578 IPR001164 GO:0005096
Vifa1g00631 833 PRINTS HIV Rev interacting protein signature 534 551 IPR001164 GO:0005096
Vifa1g00631 833 PRINTS HIV Rev interacting protein signature 515 534 IPR001164 GO:0005096
Vifa1g00631 833 ProSiteProfiles Ankyrin repeat region circular profile. 773 805 - -
Vifa1g00631 833 MobiDBLite consensus disorder prediction 444 468 - -
Vifa1g00631 833 Pfam Putative GTPase activating protein for Arf 506 643 IPR001164 GO:0005096
Vifa1g00631 833 SUPERFAMILY PH domain-like 293 448 - -
Vifa1g00631 833 Gene3D Arf GTPase activating protein 483 646 IPR038508 -
Vifa1g00631 833 Pfam PH domain 294 430 IPR001849 -
Vifa1g00631 833 MobiDBLite consensus disorder prediction 249 270 - -
Vifa1g00631 833 CDD PH_ACAP 295 435 - -
Vifa1g00631 833 SMART arf_gap_3 503 646 IPR001164 GO:0005096
Vifa1g00631 833 ProSiteProfiles Ankyrin repeat profile. 773 805 IPR002110 GO:0005515
Vifa1g00631 833 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 485 649 - -
Vifa1g00631 833 Coils Coil 227 247 - -
Vifa1g00631 833 Pfam Ankyrin repeats (many copies) 743 794 IPR002110 GO:0005515
Vifa1g00631 833 ProSiteProfiles Ankyrin repeat region circular profile. 740 771 - -
Vifa1g00631 833 SUPERFAMILY ArfGap/RecO-like zinc finger 503 643 IPR037278 -
Vifa1g00631 833 CDD ArfGap 506 635 - -
Vifa1g00631 833 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Vifa1g00631 833 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00631 Vifa-Chr1 108182748 108189556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00631 515 642 C2H2 Transcription Factor Family AT4G21160 44.186 1.81e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00631 K12489 - gmx:100789134 1422.53