Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00630 ATGGCTTTGGACCAACCTTCGTTACCTTCGAATGCGAACTCTGTTGATGGTGGTGACGGTAACGGTAACGGGACGCCACCGTCGTCCACCGTGAATGGCGGAGAGGATGGGAAACCTACGGCGAGGCTACCGCGGTGGACGAGGCAGGAGATTCTGGTGCTGATACAGGGGAAGAGTGACGCGGAGAGCCGGTTCAAACCGGGGAGGAATGGGTCCGGGTTTGGTTCGAGTGAACCGAAATGGGCGTTGGTTTCGTCGTACTGTAAGAAACACGGTGTCAACCGGGGGCCGATTCAGTGTCGGAAGCGGTGGAGCAATCTCGCCGGAGATTATAAGAAGATTAAGGAGTGGGAGAGTCAGGTGAGAGATGAAACGGAGTCGTTTTGGTTGATGAGGAATGATTTGAGGAGGGAGAGGAAATTGCCGGGGTATTTTGATCGGGAGGTTTATGATATTCTTGATTCACCGGCAGTGGGAGTTGCTGCGGCTGCTGCCGCGGCGGCGACGGTTCTTCCTGTGGCTGTGTCGGTGTCGGTTTCGGAGGCGGTCGGGGACGAGGAGGTTCATATATATGATAGTAATAGGAAAGTGAGTGGTGAAGATGGGTTGTTCTCGGATTTTGAGAAGGATGAGATTTTGGTTTCTTCCAAAGATGTTCATGTTCCTTCACCTGTTCCTATCTCAGAGAAGCAGTTTCTGCCACTTCTCAATCGCTGCCAAGGAGAAGGCAATGCTCAAGGTACCAACAATGAGAAACAACCAGCCTCAAATCCAGAAATGGGTTCCACGTCTCAAGGGGAACGGAAGAGGAAACGGTTTCCAACCGATGAAGAAGATGAATCTCTGCAAAGTCAGTTAATCGACGTGTTAGAGAAAAACGGCAAGATGCTAAGCGAACAACTAGAGGCTCAGAACATGAACTTCCAATTGGATCGCCAGCACCAGAACGACACTGCGAGTAACATAGTTGCTGTGCTTGATAAGCTTGCAAATGCTCTTGGAAGAATTGCTGATAAATTGTAG 1023 0.5054 MALDQPSLPSNANSVDGGDGNGNGTPPSSTVNGGEDGKPTARLPRWTRQEILVLIQGKSDAESRFKPGRNGSGFGSSEPKWALVSSYCKKHGVNRGPIQCRKRWSNLAGDYKKIKEWESQVRDETESFWLMRNDLRRERKLPGYFDREVYDILDSPAVGVAAAAAAAATVLPVAVSVSVSEAVGDEEVHIYDSNRKVSGEDGLFSDFEKDEILVSSKDVHVPSPVPISEKQFLPLLNRCQGEGNAQGTNNEKQPASNPEMGSTSQGERKRKRFPTDEEDESLQSQLIDVLEKNGKMLSEQLEAQNMNFQLDRQHQNDTASNIVAVLDKLANALGRIADKL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00630 340 CDD GT1 44 115 - -
Vifa1g00630 340 ProSiteProfiles Myb-like domain profile. 38 108 IPR001005 -
Vifa1g00630 340 MobiDBLite consensus disorder prediction 264 279 - -
Vifa1g00630 340 MobiDBLite consensus disorder prediction 241 263 - -
Vifa1g00630 340 Pfam Myb/SANT-like DNA-binding domain 45 131 IPR044822 -
Vifa1g00630 340 Gene3D - 46 113 - -
Vifa1g00630 340 MobiDBLite consensus disorder prediction 239 283 - -
Vifa1g00630 340 MobiDBLite consensus disorder prediction 1 48 - -
Vifa1g00630 340 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 11 340 - -
Vifa1g00630 340 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00630 Vifa-Chr1 108176294 108179310 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00630 45 116 Trihelix Transcription Factor Family AT1G33240 34.667 1.03e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa1g00630 Myb_DNA-bind_4 3.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00630 - - tpra:123890648 575.089