LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g00628	ATGGACGGAGCCAGCGGCGTCAGTAGCGGCGGAGAAGTCTCATCCCAATTACTGGCGCTGACACCGATGCAAAACTCAAACTCGTCGCCTCCGTTTTTGAGCAAGACGTATGACATGGTGGATGACCCTTCCACTGACGCCGTAGTTTCATGGAGCGCAACCAATAACAATTTTGTTGTTTGGGACCCACCGGAATTCGCTAGGGACCTTTTGCCGAAGTACTTCAAACACAACAACTTCTCAAGCTTTGTTAGACAGTTGAATACATATCAACTAAATGGAGCTGAAGAGGGAAGTTTGACAAAGAAAGCCATTCTCAGGTTAATATGTTACTTGATTATGGTCCATACGAGTGAATATGGTGTGCATTGGAATTTTTTCTTCACGCTTGCTGCAATCTCAATTCTTACATCCTTTATTAATATCCCCCCAAATTATTCTGGAGTTTTTGGATCACTTGTCCTAGTAGGTTACCAGTTCAGTTTGATGCATGGTTTAAACCATTACTTGCTTTCTAGTGAAAGAGGAATGGATATCATAAGTCAAAACAAGGAGTGGATTTTTAGCATATTTGGATATTGGGGTATGTACCTTATTGGCGTTCATTTAGGAAACTATCTTATCTTTGGAACCCATTCCTCTGCGCTTAAAAGTAGCAGATGGGTTCGGACGAGAGTTTGGGTTCTAGCAATCCTGTTTTGGAACTCAACATTTTATCCTCTGCGTTACACCAATTGGTCAGGAATTCCAGATGATAATAAAAACCGTTTCTGGAGATATACTAATCGGAAGTTTATCTTGCCGGTTGAAGCACGAGATTGGATTGAGACCACTGTTAGAGAGGCATGGAGAAGATATAAGCACAAAATTAAGAAGAATCATTTTTTGAAGTATTCCAACATGACCGAGAGACTCAAAAATCGTCCGCCAAACGTGCCAATAGCCCAGTTTAAGAGTCTTTGTGCTTATTGGAGTAAGGAAACTATACAAGCAATCAGTGAAAATAACACTAGAAATAGAGTTCAACTAAAGTGGATGCATCGAATGGGTCCCAAAAACTTTGCTTTGACTCGTGAAAAAGTGGAAAAAAGAGAGCCCACTCAATCAGAAATGTTTGTTGAAACTCGAAAAGGAAATAAAGGAAAGGAACTGGATGTAGAAACTGGAAAAGTAATTTCCCAACTTCAAGAAATGGTTGAAAAGGAGGAAAGTGATACAGAAGCTTTTAAAGTTTTTTTTGGAAAGGAGTGTCCAGGCAGGGTACGCTGTTATGGGAGAAACATAACTAAAACTTCCTTAAAGAGAAAGGCAGAGATTAATGCTTTGAAACACGCCCACAGTGAAGAGGTCTCTACATTAAGGGATGAGTTTCAAGATAAGATTGATAGATTGCAAAATGCTTTTAAGACCCAATGTATCAATGAAGATATTGAAAAGGACGATATAAATGATGAAATTCAAGAGGACGACATAAATGATAAAATTCAAGAGGACGACCTAAATGATAAAATTCAAGAGGACGACGTAGATGACGAATTTCAAGAGGACGACATAGATCTAGATGATGAATTTCAAGAGGAGGATATAGATGGTGAATTTCAAGAGGACGACGTAGATGAAGAATTTATGGAGGATGACATATCTAACGAATTTCAAGAGGACGATCTGGATGCTTTACTCCTAGAAGACAAACTTGAATGA	1701	0.3921	MDGASGVSSGGEVSSQLLALTPMQNSNSSPPFLSKTYDMVDDPSTDAVVSWSATNNNFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYQLNGAEEGSLTKKAILRLICYLIMVHTSEYGVHWNFFFTLAAISILTSFINIPPNYSGVFGSLVLVGYQFSLMHGLNHYLLSSERGMDIISQNKEWIFSIFGYWGMYLIGVHLGNYLIFGTHSSALKSSRWVRTRVWVLAILFWNSTFYPLRYTNWSGIPDDNKNRFWRYTNRKFILPVEARDWIETTVREAWRRYKHKIKKNHFLKYSNMTERLKNRPPNVPIAQFKSLCAYWSKETIQAISENNTRNRVQLKWMHRMGPKNFALTREKVEKREPTQSEMFVETRKGNKGKELDVETGKVISQLQEMVEKEESDTEAFKVFFGKECPGRVRCYGRNITKTSLKRKAEINALKHAHSEEVSTLRDEFQDKIDRLQNAFKTQCINEDIEKDDINDEIQEDDINDKIQEDDLNDKIQEDDVDDEFQEDDIDLDDEFQEEDIDGEFQEDDVDEEFMEDDISNEFQEDDLDALLLEDKLE	566

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g00628	566	Coils	Coil	447	467	-	-
	Vifa1g00628	566	Pfam	Plant transposase (Ptta/En/Spm family)	316	429	IPR004252	-
	Vifa1g00628	566	MobiDBLite	consensus disorder prediction	502	533	-	-
	Vifa1g00628	566	SMART	hsfneu3	28	116	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vifa1g00628	566	SUPERFAMILY	"Winged helix" DNA-binding domain	30	91	IPR036390	-
	Vifa1g00628	566	FunFam	Heat stress transcription factor B-4	24	97	-	-
	Vifa1g00628	566	Pfam	HSF-type DNA-binding	32	94	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vifa1g00628	566	MobiDBLite	consensus disorder prediction	494	533	-	-
	Vifa1g00628	566	Gene3D	-	24	111	IPR036388	-
	Vifa1g00628	566	PRINTS	Heat shock factor (HSF) domain signature	70	82	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vifa1g00628	566	PRINTS	Heat shock factor (HSF) domain signature	32	55	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vifa1g00628	566	PRINTS	Heat shock factor (HSF) domain signature	83	95	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vifa1g00628	566	PANTHER	PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS W PROTEIN	115	238	IPR009447	GO:0006506\|GO:0016020\|GO:0016746

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g00628	Vifa-Chr1	107083860	107088568	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g00628	1	90	HSF	AT4G17750	65.306	5.35e-34	133

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vifa1g00628		Transposase_24	1.9e-17	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g00628	-		K05283	mtr:112420737	407.142