Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00627 ATGTTTAAGAAAAGGCAAACCCTTTTTTCTCTTTCAAATAAGTTGTTGGTATTTCAGCTTCTTGTTTTGTTGTTGTTTAGTTTGCATCATGACAATACTGTGCAATGTCATGGGAGATTGAGTAAACATGTGTCGTATGAGTCTCGGTCGGGGGCGGAATATAGGGATGATTCTAAGAAGATTATTGTTAGTGTAGTTTTAGGAGTAATCACTGGATTAATTGGTTCGATTCTGTTTGTGGTTGTGATTCGTTGCGTTGTTCAGTATCTGAATAGAACGCCTATCCTCAAAGGACCGGTGATATTCTCGCCAAAGATTGCCTCGAAGACACTCCAATTAGCTTTGTCGAAAGAAAACCATTTGCTTGGTTCGAGTGCGAATGGGAAGTACTATAAAACTGTTCTTGAGAATGGTCTCATAATTGCGGTGAAAAAGCTTACACCGTTTGAGAGCAATTCGCAAGAGAGTAGGAGAAAATCCGTGAAGAGGAAGATACAGATGGAGCTAGAGCTTCTTGCAAGCTTAAGACATAGGAATTTGATGAGTTTGAGGGCTTATGTTCGCGAAAACGATGGATTCTCATTGGTTTATGATTATGTGTCGACCGGTAGTCTTGCAGATGTGATGAATAGGGTTAGAGAAAATGAGTTGCAGATTGGTTGGGAAGTTAGGTTGAGGATTGCTGTTGGTGTTGTGAAGGGTCTTCAATATCTTCATTACACTTGTGTTCCTCAAATTTTACATTTCAATTTGAAGCCTACAAATGTGATGTTGGATTCTGAATTTGAACCTAGATTGGCAGATTATGGATTGGCTAAACTTCTACCCAACTTAGATAGAGGGACTTCTCTCAACACCCCTCCCGAATGTTTCCACAATCGCAGCAGGTACACAGAAAAGAGCGACATATTCAGCTTCGGGATGATACTAGGAGTCTTACTAACCGGTAAGGACCCTACGGATGCATTCTTTGGAGAAGCGGTGAGAGGTGGAAGTTTGGGATGTTGGCTGCGACATTTGAAGCAAGCGGGAGAGGAACGAGAAGCTCTAGATAAGAGTATTTTGGGGGAACAAGGTGAAGAAGATGAGATGCTAATGGCTGTTGGGATTGCTGCGGCGTGCTTATCTGATATGCCTGCTGATAGACCTTCCAGTGATGAACTTGTTCACATGCTAACACAGCTCAATAGTTTTTGA 1197 0.4169 MFKKRQTLFSLSNKLLVFQLLVLLLFSLHHDNTVQCHGRLSKHVSYESRSGAEYRDDSKKIIVSVVLGVITGLIGSILFVVVIRCVVQYLNRTPILKGPVIFSPKIASKTLQLALSKENHLLGSSANGKYYKTVLENGLIIAVKKLTPFESNSQESRRKSVKRKIQMELELLASLRHRNLMSLRAYVRENDGFSLVYDYVSTGSLADVMNRVRENELQIGWEVRLRIAVGVVKGLQYLHYTCVPQILHFNLKPTNVMLDSEFEPRLADYGLAKLLPNLDRGTSLNTPPECFHNRSRYTEKSDIFSFGMILGVLLTGKDPTDAFFGEAVRGGSLGCWLRHLKQAGEEREALDKSILGEQGEEDEMLMAVGIAAACLSDMPADRPSSDELVHMLTQLNSF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00627 398 SUPERFAMILY Protein kinase-like (PK-like) 119 393 IPR011009 -
Vifa1g00627 398 ProSiteProfiles Protein kinase domain profile. 116 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00627 398 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 108 199 - -
Vifa1g00627 398 Gene3D Phosphorylase Kinase; domain 1 103 199 - -
Vifa1g00627 398 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 200 397 - -
Vifa1g00627 398 Pfam Protein kinase domain 118 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00627 398 Gene3D Transferase(Phosphotransferase) domain 1 200 397 - -
Vifa1g00627 398 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 45 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00627 Vifa-Chr1 107010260 107011730 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00627 62 395 Receptor kinase-like Gene Family AT2G31880 34.930 1.24e-60 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Vifa1g00627 Pkinase 1.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00627 - - gmx:102664273 633.254