Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00626 ATGTTTAAGAAAAGGCAAACCCTTTTTTCTCTTTCAAATAAGTTGTTGGTATTTCAGCTTCTTGTTTTGTTGTTGTTTAGTTTGCATCATGACAATACTGTGCAATGTCATGGGAGATTGAGTAAACATGTGTCGTATGAGTCTCGGTCGGGGGCGGAATATAGGGATGATTCTAAGAAGATTATTGTTAGTGTAGTTTTAGGAGTAATCACTGGATTAATTGGTTCGATTCTGTTTGTGGTTGTGATTCGTTGCGTTGTTCAGTATCTGAATAGAACGCCTATCCTCAAAGGACCGGTGATATTCTCGCCAAAGATTGCCTCGAAGACACTCCAATTAGCTTTGTCGAAAGAAAACCATTTGCTTGGTTCGAGTGCGAATGGGAAGTACTATAAAACTGTTCTTGAGAATGGTCTCATAATTGCGGTGAAAAAGCTTACACCGTTTGAGAGCAATTCGCAAGAGAGTAGGAGAAAATCCGTGAAGAGGAAGATACAGATGGAGCTAGAGCTTCTTGCAAGCTTAAGACATAGGAATTTGATGAGTTTGAGGGCTTATGTTCGCGAAAACGATGGATTCTCATTGGTTTATGATTATGTGTCGACCGGTAGTCTTGCAGATGTGATGAATAGGGTTAGAGAAAATGAGTTGCAGATTGGTTGGGAAGTTAGGTTGAGGATTGCTGTTGGTGTTGTGAAGGGTCTTCAATATCTTCATTACACTTGTGTTCCTCAAATTTTACATTTCAATTTGAAGCCTACAAATGTGATGTTGGATTCTGAATTTGAACCTAGATTGGCAGATTATGGATTGGCTAAACTTCTACCCAACTTAGATAGAGGGACTTCTCTCAACACCCCTCCCGAATGTTTCCACAATCGCAGGTACACAGAAAAGAGCGACATATTCAGCTTCGGGATGATACTAGGAGTCTTACTAACCGGTAAGGACCCTACGGATGCATTCTTTGGAGAAGCGGTGAGAGGTGGAAGTTTGGGATGTTGGCTGCGACATTTGAAGCAAGCGGGAGAGGAACGAGAAGCTCTAGATAAGAGTATTTTGGGGGAACAAGGTGAAGAAGATGAGATGCTAATGGCTGTTGGGATTGCTGCGGCGTGCTTATCTGATATGCCTGCTGATAGACCTTCCAGTGATGAACTTGTTCACATGCTAACACAGCTCAATAGTTTTTGA 1194 0.4162 MFKKRQTLFSLSNKLLVFQLLVLLLFSLHHDNTVQCHGRLSKHVSYESRSGAEYRDDSKKIIVSVVLGVITGLIGSILFVVVIRCVVQYLNRTPILKGPVIFSPKIASKTLQLALSKENHLLGSSANGKYYKTVLENGLIIAVKKLTPFESNSQESRRKSVKRKIQMELELLASLRHRNLMSLRAYVRENDGFSLVYDYVSTGSLADVMNRVRENELQIGWEVRLRIAVGVVKGLQYLHYTCVPQILHFNLKPTNVMLDSEFEPRLADYGLAKLLPNLDRGTSLNTPPECFHNRRYTEKSDIFSFGMILGVLLTGKDPTDAFFGEAVRGGSLGCWLRHLKQAGEEREALDKSILGEQGEEDEMLMAVGIAAACLSDMPADRPSSDELVHMLTQLNSF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00626 397 Pfam Protein kinase domain 118 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00626 397 SUPERFAMILY Protein kinase-like (PK-like) 119 392 IPR011009 -
Vifa1g00626 397 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 200 396 - -
Vifa1g00626 397 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 108 199 - -
Vifa1g00626 397 Gene3D Phosphorylase Kinase; domain 1 103 199 - -
Vifa1g00626 397 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 45 393 - -
Vifa1g00626 397 Gene3D Transferase(Phosphotransferase) domain 1 200 396 - -
Vifa1g00626 397 ProSiteProfiles Protein kinase domain profile. 116 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00626 Vifa-Chr1 107010260 107011730 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00626 62 394 Receptor kinase-like Gene Family AT2G31880 34.746 9.76e-62 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Vifa1g00626 Pkinase 3.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00626 - - gmx:102664273 627.861