Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00622 ATGGGAAAGAAAAAGACAGACGACGCAGGTCCACCTACAAAGGCTAAAGCAAGTGGTAAAGATGTTTCTAAGAAGGAAAAACTTTCTGTATCTGCCTTGTTGGCAAGTATGAAAGAAAAAGCTGATAATCCTATAAAAGCTTCTTCCTCGAGTAAGCCGAAGCCAAAACTTGCTCCAAAAGCTTCTACATACACTGATGGTATTGATCTTCCTCCCTCCTCTGATGATGAATCCGAAGAGGAGTTAGAGCAAAAGCATAGACCTGATGTGAAGCCACTTGAGGTGTCTATTGCTGAAAAGGAGTTGAAAAAGCGTGAAAAGAAAGATATTTTAGCTGCCCATCAGGCTGAACAGGCAAGGAAAGAAGCTCTTAGGGATGATCATGATGCTTTCACTGTTGTCATTGGAAGTCGGGCTTCGGTGCTTGATGGAGATGATGGTGCTGATGCTAATGTCAAAGATATTACGATAGAAAATTTTTCAGTGTCTGCTCGGGGTAAAGAACTTCTGAAGAATGCATCGGTGAAGATATCTCATGGAAAGCGGTATGGTTTAGTTGGGCCGAATGGAATGGGCAAATCAACACTTTTGAAGCTTCTTGCTTGGAGGAAGATACCCGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACAGCGCTTGAAGCCGTAGTTTCAGCTAATGCTGAACTTGTTAAAGTTCGACAAGAAGTTGCTGATCTACAGAATGCGGCTGCTGGTGAAGAAGGTGTGGATAATGATGATACTAATGAGGACGGGGATGCGGCAGATAAGCTAGCAGAGCTGTATGATCAATTACAACTGATGGGGTCTGATGCTGCTGAATCCCAAGCGTCAAAGATTTTAGCCGGTCTGGGTTTTACTAAGGATATGCAGGGCCGTCCTACAAAATCTTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTCGTACAACCCACTTTATTATTGCTCGATGAACCCACTAATCATCTTGACCTTAGGGCTGTTCTCTGGTTGGAAGAGTACTTGTGTCGTTGGAAGAAAACTTTGGTGGTTGTATCACACGACAGAGATTTCCTCAATACTCGTCGTAGAGAGGTGAATAAGAAGTTTGAGATTTATGACAAGCAATTGAAAGCAGCTAGAAGGACCGGAAACAAGGCTCAACAAGATAAGGTCAAGGATCGAGCTAAGTTTGCAGCTGCCAAGCAAGCATCAAAAAGCAAAAGTAAGGGAAAGGTTGATGATGAGGATGAGGCCCAAGTAGAGGCACCACACAAGTGGAGGGACTACAGTGTGGAGTTTCACTTTCCTGAACCTACTGAGCTCACACCCCCTCTTCTGCAGCTTATTGAAGTGAGCTTCAGCTACCCAAACCGAAAGGATTTCAGACTCTCAAATGTTGATGTTGGCATTGATATGGGGACCCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACACTGCTAAATCTTCTAGCCGGTGATTTGGATCCAAGTGAAGGTGAGGGTGAAGTTCGAAGGAGTCAGAAGTTAAGGATTGGAAGATATTCCCAACATTTTGTGGACCTACTGACGATGGACGAAACACCTGTTCAGTACCTTCTTCGTCTTCACCCAGACCAGGAGGGACTTAGTAAGCAGGAGGCTGTCCGGGCAAAACTTGGTGGAGTTGTTCTTGTTAGTCACGATTCTAGATTGATATCACGAGTCTGTGATGATGAAGAAAAGAGTCAAATATGGGTTGTGGAGGATGGCACTGTCAGAAAATTCCCTGGAACATTTGACGAGTACAAAGAAGATTTGCTGAAGGAGATTAAAGCTGAAGTTGATGATTGA 1881 0.4391 MGKKKTDDAGPPTKAKASGKDVSKKEKLSVSALLASMKEKADNPIKASSSSKPKPKLAPKASTYTDGIDLPPSSDDESEEELEQKHRPDVKPLEVSIAEKELKKREKKDILAAHQAEQARKEALRDDHDAFTVVIGSRASVLDGDDGADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANAELVKVRQEVADLQNAAAGEEGVDNDDTNEDGDAADKLAELYDQLQLMGSDAAESQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTRRREVNKKFEIYDKQLKAARRTGNKAQQDKVKDRAKFAAAKQASKSKSKGKVDDEDEAQVEAPHKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNRKDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLDPSEGEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGGVVLVSHDSRLISRVCDDEEKSQIWVVEDGTVRKFPGTFDEYKEDLLKEIKAEVDD 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00622 626 Coils Coil 97 117 - -
Vifa1g00622 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 436 618 IPR027417 -
Vifa1g00622 626 FunFam ATP-binding cassette sub-family F member 2 448 554 - -
Vifa1g00622 626 Pfam ABC transporter 477 521 IPR003439 GO:0005524
Vifa1g00622 626 SMART AAA_5 486 601 IPR003593 GO:0016887
Vifa1g00622 626 SMART AAA_5 179 384 IPR003593 GO:0016887
Vifa1g00622 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 373 IPR027417 -
Vifa1g00622 626 ProSitePatterns ABC transporters family signature. 313 327 IPR017871 GO:0005524|GO:0016887
Vifa1g00622 626 Gene3D - 453 554 IPR027417 -
Vifa1g00622 626 Coils Coil 231 251 - -
Vifa1g00622 626 Gene3D - 555 625 IPR027417 -
Vifa1g00622 626 Gene3D - 152 434 IPR027417 -
Vifa1g00622 626 MobiDBLite consensus disorder prediction 394 433 - -
Vifa1g00622 626 MobiDBLite consensus disorder prediction 1 90 - -
Vifa1g00622 626 CDD ABCF_EF-3 155 385 - -
Vifa1g00622 626 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 155 412 IPR003439 GO:0005524
Vifa1g00622 626 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 125 569 - -
Vifa1g00622 626 Pfam ABC transporter 170 341 IPR003439 GO:0005524
Vifa1g00622 626 FunFam Putative ABC transporter ATP-binding component 154 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00622 Vifa-Chr1 106339209 106341365 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00622 459 533 Calmodulin-binding Proteins AT2G36910 37.647 5.42e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00622 K06184 - gmx:100806865 872.848