Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00607 ATGGCTCCTACAAAGTCAGATGGCCAAGTGATTAAGAAGAAAGGAAAGAAGATTAGAACAACTGCGAAATTTCACCGGCCAAAGACTCTATCGAAGGACAAAAACCTAAAGTATCCTCGCATTAGTGCAACCCCAAGAAACAAGTTGGACCACTATCAAATACTTAAATTTCCTCTAACTACCGAGTTTGCAATGAAGAAGATTGAAGATAACAATACCCTTGTTTTTATTGTCGACCTGCGTGCTGACAAGAAGAAAATTAAAGATACTATGAAGAAAATGTACGATATTCAGGCCAAGAAAGTGAACACTTTGATCAGGCCTGATGGTACAAAGAAAGCCTATGTGCGGTTGACTCCAGATTAG 366 0.3907 MAPTKSDGQVIKKKGKKIRTTAKFHRPKTLSKDKNLKYPRISATPRNKLDHYQILKFPLTTEFAMKKIEDNNTLVFIVDLRADKKKIKDTMKKMYDIQAKKVNTLIRPDGTKKAYVRLTPD 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00607 121 PANTHER 60S RIBOSOMAL PROTEIN L23A 8 121 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vifa1g00607 121 Pfam Ribosomal protein L23, N-terminal domain 12 43 IPR005633 -
Vifa1g00607 121 Gene3D - 15 121 IPR012677 -
Vifa1g00607 121 Pfam Ribosomal protein L23 54 114 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vifa1g00607 121 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 51 121 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vifa1g00607 121 FunFam 60S ribosomal protein L23a 14 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00607 Vifa-Chr1 102523578 102524004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00607 8 121 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 84.211 7.46e-55 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00607 K02893 - gmx:100777933 195.667