Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00606 ATGGGTGTGTTTAATTTAGTGTTTCATCATGGGGGAAGTTTCGTGCAAGACGGCCATACGTATTATAGAGGAGGTAGTGAGACTACTGTTGAAGGTCAGGACGAAGATAAATGGAGCTTTTTTGAAGCTGTTAGTCTGGTTAAAGATTGGGGTTATGAAGGTTTTAGGCTATGGAGAAAGATTCCGCAAACGGATGAAGGGTTTACAAATGTTGTTGATGATGCAGGAGCTGTAGAAGTTGCTAAGCATTACATGATGACCAAGGTTCTGGTACCTAATGTTGATGACTTCAGCACCTCTAGTGGAGATGATAGTACTGGTGACTATGTTGATGCAAGCCAATGTTTCAATGACAGTGAAGAGGAAAGAGTAATTGACGTAGAAGAAGAGCAATTTGAACAAGTGGAGGTAGCTGTTCCAGTTAGTGGGAATAGGGTGGAGATCGAAGGGAAATCATTGAGATTCAAGCGTTGTGCATCCAAGGATCCCAAAAAGATGAAAGAAAAGAGCAAAAGGGACAAGGTCAGTGTTTTGGTGCCCAAAAGTGTCTTAGGATCTTGTTCAAAGAGGGCTACAAGGAAATGTGAAGATGTGGATTATGCTAGTGAGGAACTTGAAAGTTCAGATGCTGATGAAAGTGACATGGATGACAAACCTTCCAAGCCAAAGTATGAGAAGTTTACATCAGAGCTGCTTAACAAAGACTTTCAATTCAAATTAGGTATGGATTTAAAGATGCTATCAGTGATTGTGGTTGAAAAGAGGAAGTCACAAGGGAAAGTTAAACTGTCTGAAATTATGTCTGAGCTTAGACAGAAATATTCAGTGGGCATTACCAAAGGGAAAGCTTTGAGAGCCAAAGCTATGGTTGAAGAAATAATTGAAGGTGATGCAAAGGAACAGTATAAAATGTTATGGAGATATGCAGCTGAGTTAAGAAAACATTGTGCTGGGAACACTGTCAAACTAAATATTGAGAGACCACATCCAACACTACCACTAAGATTTGGTGCTTTTTGGATTTTGCAATGGCTCTTACAAAGGTGGACAAACCGAAAAGATGATCCTAAAGCTCAGGCCTTGAAGACGACCAAGGCTGTGAAGTCAGGTGGCCAAGTGATTAAGAAGAAAGCAATGAAGATCAAAACAAATGTCACATTTCACCGGCCAAAGACTCTGTCGAAGGACAGAAACCCAAAGTATCCTCGCATTAGTGCAACACCAAGAAACAAGTTGGACCACTATCAAATACTTAAATTTCCTCTAAATACCGATTCTGCAATAAAGAAGATTGAAGATAACAATACCCTTGATGCATTGGATGCTGCTAACAAAATCGGTATCATTTAA 1350 0.3993 MGVFNLVFHHGGSFVQDGHTYYRGGSETTVEGQDEDKWSFFEAVSLVKDWGYEGFRLWRKIPQTDEGFTNVVDDAGAVEVAKHYMMTKVLVPNVDDFSTSSGDDSTGDYVDASQCFNDSEEERVIDVEEEQFEQVEVAVPVSGNRVEIEGKSLRFKRCASKDPKKMKEKSKRDKVSVLVPKSVLGSCSKRATRKCEDVDYASEELESSDADESDMDDKPSKPKYEKFTSELLNKDFQFKLGMDLKMLSVIVVEKRKSQGKVKLSEIMSELRQKYSVGITKGKALRAKAMVEEIIEGDAKEQYKMLWRYAAELRKHCAGNTVKLNIERPHPTLPLRFGAFWILQWLLQRWTNRKDDPKAQALKTTKAVKSGGQVIKKKAMKIKTNVTFHRPKTLSKDRNPKYPRISATPRNKLDHYQILKFPLNTDSAIKKIEDNNTLDALDAANKIGII 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00606 449 Pfam Ribosomal protein L23, N-terminal domain 357 406 IPR005633 -
Vifa1g00606 449 Gene3D - 378 448 IPR012677 -
Vifa1g00606 449 PANTHER 60S RIBOSOMAL PROTEIN L23A 352 437 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vifa1g00606 449 MobiDBLite consensus disorder prediction 200 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00606 Vifa-Chr1 102485121 102493156 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00606 379 437 Cytoplasmic Ribosomal Protein Gene Family AT3G55280 79.661 3.64e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00606 K02893 - gmx:100777933 150.599