Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00605 ATGTTTCCTTCCACTTATTGCTCTTTAGGTTCTTACCCTAATTATAATTCTTCTTCATCTTCACATTCATACCCTCCTTTTACTTACCTTACCCCTGACCAAAATGCTTCTTCAAACAACAATAGCAACAACATCAACACTTTTCTTCATGATCCAACTATTTCTGTTCCATACACACAAACTTCACATCATCATCATCATCATGTTCCAATTAATCCTGAAACACTAACAAATTGGGCAGTTGCTGATTATGCTGCAATGCTCAAACAAGATCTAAGTGGTGGTTCTTCTCATTACAACTTCTCAAATTTGCTTGCCAAAAAGCCGCTGAAGAAACCGGCCAAGAAAGACCGGCACAGCAAGATTCATACATCTCAAGGTTTGAGAGACAGAAGGGTGAGGCTCTCGATCGAGATAGCGCGGAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGACAAAGCTAGCAACACACTTGAGTGGCTTTTCAACAAATCAAAAGAAGCAATCGAAGAGTTAACTAGAAGCAAGAACAATATAGCTTCTGGTGTGGATGATGCTGATGATCATAGCCTCTCTTCTTCGTCTTCCGAAGGAGAAGACGAAGTTCGAAAGATGAAAAGAGCACAGAAAGAATCTTCAAAGATGAAGGACTCAAGAGAAAAAGCAAGAGCAAGAGCAAGAGAAAGAACAAGTGAAATGAAGATTCAAGATTTGAAGGAAAAGTACCCAGAAACTGATCATAATCAGCAAATTCTTCATCAATTGATGCCTAACGACGACGAAAATTCGAAACTAGCTCAAAGAGATGATATCTTTAACTTTATTGAGGAATCAATTGTGATTAAGAGAAAGCTGAAGAAATCTTCTTCACAACATCATCAACAAAACATTAGTTTTGATCACAATGACTCTCCAATGTTATCAACAAATTGGGATACAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGCTGCAACAGGAAGATCCAACTTTTCTGCAATATCAAGAATGAATCTGTCATCAGGGCTACAAATCTTTGGAAAATCATGGGAAGAATGCAATAACAGTCCAAATAGATATTAG 1152 0.3464 MFPSTYCSLGSYPNYNSSSSSHSYPPFTYLTPDQNASSNNNSNNINTFLHDPTISVPYTQTSHHHHHHVPINPETLTNWAVADYAAMLKQDLSGGSSHYNFSNLLAKKPLKKPAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKEAIEELTRSKNNIASGVDDADDHSLSSSSSEGEDEVRKMKRAQKESSKMKDSREKARARARERTSEMKIQDLKEKYPETDHNQQILHQLMPNDDENSKLAQRDDIFNFIEESIVIKRKLKKSSSQHHQQNISFDHNDSPMLSTNWDTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGRSNFSAISRMNLSSGLQIFGKSWEECNNSPNRY 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00605 383 ProSiteProfiles R domain profile. 217 234 IPR017888 -
Vifa1g00605 383 MobiDBLite consensus disorder prediction 191 247 - -
Vifa1g00605 383 Coils Coil 206 242 - -
Vifa1g00605 383 MobiDBLite consensus disorder prediction 181 247 - -
Vifa1g00605 383 MobiDBLite consensus disorder prediction 287 351 - -
Vifa1g00605 383 ProSiteProfiles TCP domain profile. 115 173 IPR017887 -
Vifa1g00605 383 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 107 344 IPR005333 GO:0003700
Vifa1g00605 383 Pfam TCP family transcription factor 114 235 IPR017887 -
Vifa1g00605 383 MobiDBLite consensus disorder prediction 292 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00605 Vifa-Chr1 102153304 102154559 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00605 50 238 TCP Transcription Factor Family AT1G67260 41.014 8.69e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa1g00605 TCP 1.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00605 - - cam:101489716 415.231