Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00601 ATGTTTCCTTCCACTTATTGCTCTTTAGGTTCTTACCCTAATTATAATTCTTCTTCATCTTCACATTCATACCCTCCTTTTACTTACCTTACCCCTGACCAAAATGCTTCTTCAAACAACAATAGCAACAACATCAACACTTTTCTTCATGATCCAACTATTTCTGTTCCATACACACAAACTTCACATCATCATCATCATCATGTTCCAATTAATCCTGAAACACTAACAAATTGGGCAGTTGCTGATTATGCTGCAATGCTCAAACAAGATCTAAGTGGTGGTTCTTCTCATTACAACTTCTCAAATTTGCTTGCCAAAAAGCCACTGAAGAAACCGGCCAAGAAAGACCGACACAGCAAGATTCATACATCTCAAGGTTTGAGAGACAGAAGGGTGAGGCTCTCGATCGAGATAGCGCGGAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGACAAAGCTAGCAACACACTTGAGTGGCTTTTCAACAAATCAAAAGAAGCAATTGAAGAGTTAACTAGAAGCAAGAACAATATAGCTTCTGGTGTGGATGATGCTGATGATCATAGCCTCTCTTCTTCGTCTTCCGAAGGAGAAGACGAAGTTCGGAAGATGAAAAGAGCACAGAAAGAATCTTCAAAGATGAAGGACTCAAGAGAAAAAGCAAGAGCAAGAGCAAGAGAAAGAACAAGTGAAATGAAGATTCAAGATTTGAAGGAAAAGTACCCAGAAACTGATCATAATCAGCAAATTCTTCATCAATTGATGCCTAACGACGACGAAAATTCGAAACTAGCTCAAAGAGATGATATCTTTAACTTTATTGAGGAATCAATTGTGATTAAGAGAAAGCTGAAGAAATCTTCTTCACAACATCATCAACAAAACATTAGTTTTGATCACAATGACTCTCCAATGTTATCAACAAATTGGGATACAAATAATAATAATAATAATAATAATAACAATGCCGCTGCAACTGGAAGATCCAACTTTTCTGCAATATCAAGAATGAATCTATCATCAGGGCTACAAATCTTTGGAAAATCATGGGAAGAATGCAATAACAGTACAAATAGATATTAG 1089 0.3664 MFPSTYCSLGSYPNYNSSSSSHSYPPFTYLTPDQNASSNNNSNNINTFLHDPTISVPYTQTSHHHHHHVPINPETLTNWAVADYAAMLKQDLSGGSSHYNFSNLLAKKPLKKPAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKEAIEELTRSKNNIASGVDDADDHSLSSSSSEGEDEVRKMKRAQKESSKMKDSREKARARARERTSEMKIQDLKEKYPETDHNQQILHQLMPNDDENSKLAQRDDIFNFIEESIVIKRKLKKSSSQHHQQNISFDHNDSPMLSTNWDTNNNNNNNNNNAAATGRSNFSAISRMNLSSGLQIFGKSWEECNNSTNRY 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00601 362 ProSiteProfiles R domain profile. 217 234 IPR017888 -
Vifa1g00601 362 MobiDBLite consensus disorder prediction 290 327 - -
Vifa1g00601 362 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 109 333 IPR005333 GO:0003700
Vifa1g00601 362 Pfam TCP family transcription factor 114 235 IPR017887 -
Vifa1g00601 362 Coils Coil 206 242 - -
Vifa1g00601 362 MobiDBLite consensus disorder prediction 292 327 - -
Vifa1g00601 362 MobiDBLite consensus disorder prediction 191 232 - -
Vifa1g00601 362 ProSiteProfiles TCP domain profile. 115 173 IPR017887 -
Vifa1g00601 362 MobiDBLite consensus disorder prediction 181 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00601 Vifa-Chr1 101143987 101145176 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00601 50 238 TCP Transcription Factor Family AT1G67260 41.014 9.64e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa1g00601 TCP 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00601 - - cam:101489716 420.624