Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00595 ATGCGCTTCCACACCAAACTCCCTGCACCTCTCTTACTCCTTTATCTTTCTTTATTCTCTCCGGCATCCGCTCAGCCTCCTCAGCCTCTATCTCCACCACCGCCGCCGTTGCGAGATCCATTCTCGAGGATGAGTTTGGATAAGACTATGGCGTCGATTCTTATCCTCCTCGTCGCGGTTTTCTTCACTCTCGGCTTCATTTCCATCTACACTCGTCAATGCAGAGAGCAACGGATCAGAGGGAGAATCGATCTCGCTGTTCCGATCAACGGCGGCGACGGTGACAGACGACCGTACGGACTCGATTCGAAGACCATCGACAATTTTCCCAACTTTGTTTATTCTGAGGTTAAGGATCTGAAAATTGGAAGAGTTACGCTAGAATGCGCCGTGTGCTTGAACGAGTTTGAAGATCATGAAACGCTGCGTTTGATTCCGGTTTGTAGCCACGTGTTCCATCGCGACTGTATTGATGCGTGGTTGTTGCATCACTCCACGTGTCCGGTTTGTCGAGCCGATCTTGTTCCCGATCCGAAAGAGGAGTTGTCGCCTTCTTCAATTCTGATTCAGATCTCGGATATTGAAAACAATTTGAATGAACCGGGTTTAAACCATGAACCGGCTTTGATTGAACCGGTTGATGTGGGTGACAATGACAAGACAAAGATAGTAAAAGTGGCTCCAGGGGTGAATTTAGATGGAACCATGAATAAACCGGTTCGGTCGAAGTCAATGGGTTTAATGTTTGCGAGATTGTTCTCCCGGTCTAACTCGATGGGCCAGTTAACTGTTCGGTCGAGTGAAGATTGCGAGCGGTTCACATTGAGATTGCCGGATGAGGTTCATGATAGGCTTGTGAATGACAGGATATTCAACCGGTCGAAAAGTTTGGGGGTGGAAATGGCATTACAGAGTGAGAGAAGGGGTTTTAGAACGAGTAGTGTGGGGAGGAGTTTTTTAAGATACGAGCGGTTCAATGTGGAGAGCCGGCTGGACCGGAGTGGGTTTAGTTGTGGTCCGTCTTTGTTGGGCCGGGTTGGTTCAAAAAGGTTAACTAAGGATGGGAATAAGGGGACAATGGGTGTTGTAGATGAAGGTGATGTTGATGTTGAAGAACGTTCTTCAAGTCGATTAGTTTATAATGATTGA 1149 0.4752 MRFHTKLPAPLLLLYLSLFSPASAQPPQPLSPPPPPLRDPFSRMSLDKTMASILILLVAVFFTLGFISIYTRQCREQRIRGRIDLAVPINGGDGDRRPYGLDSKTIDNFPNFVYSEVKDLKIGRVTLECAVCLNEFEDHETLRLIPVCSHVFHRDCIDAWLLHHSTCPVCRADLVPDPKEELSPSSILIQISDIENNLNEPGLNHEPALIEPVDVGDNDKTKIVKVAPGVNLDGTMNKPVRSKSMGLMFARLFSRSNSMGQLTVRSSEDCERFTLRLPDEVHDRLVNDRIFNRSKSLGVEMALQSERRGFRTSSVGRSFLRYERFNVESRLDRSGFSCGPSLLGRVGSKRLTKDGNKGTMGVVDEGDVDVEERSSSRLVYND 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00595 382 CDD RING-H2_EL5-like 128 171 - -
Vifa1g00595 382 FunFam E3 ubiquitin-protein ligase ATL6 91 177 - -
Vifa1g00595 382 SMART ring_2 129 170 IPR001841 -
Vifa1g00595 382 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Vifa1g00595 382 PANTHER RING FINGER DOMAIN-CONTAINING 35 179 - -
Vifa1g00595 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 176 IPR013083 -
Vifa1g00595 382 Pfam Ring finger domain 128 171 IPR001841 -
Vifa1g00595 382 SUPERFAMILY RING/U-box 106 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00595 Vifa-Chr1 100073073 100074221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00595 1 381 Rapid Response to Elicitors AT3G05200 36.761 1.63e-55 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00595 K10664 - gmx:100815982 350.903