Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00594 ATGCAAAAGAATAATCACTTTAGACTCTTGAGTTTCGGTCATGGCCAAGCATGGTTCACTTTGTTGCTGGTTACTAGTCTCATACAACTCTTGCTGCCGGTAACCGGTCAACCGATGGGACCGGAAGATCCAACGGAGAACAACAAATCAGTAGCAACCATAATGGGAATTGTAGCCCTAATGTTCGTCTTCTCGGGTTTTCTTTCTCTCTACTCAGCCAGATGCAGCGATCGTCAACACGGAGTTATTTACGACCTCACTTTACCTAACGGTGCAAACGGAGTTAGGGCACAAAACAACTTGCCAAGTAACGGTTTAAACCAAGATGTCATCAACACTTTTCCAACATTTCGTTACTCCAACGTGAAGGGACTTAAGATTGGGAAAAGCACGTTGGCTTGTGCTGTTTGTTTGAACGAGTTTCAAGATGATGAAACATTGCGTTTGATTCCTAAATGTAGCCATGTTTATCACCATGGTTGTATAGATATTTGGCTTGTTTCTCATAATACTTGTCCTGTTTGTCGTGCTAATCTTGTTCCGATATCCGACGAGGACGCTACCGAGCCTCCGATTATATCCATTCAGATACCAGAGGTAGAATCACATCATAATGAACAAGTAGAAGAAGTAGAACATGTTGTTGAAGTGGAACAAAAGGGAGACATAATTGAAGTGGAATATTCACCAAAGATAGATTTGCTACGTAGGTCTAAGACATATTCTGCACCAACACGGTCGAGATCCACTGGATACTTATCTTCTCTTTTGCTATCACGGTCGAACTCGACAGGTGTGTTGGTGCAGCCAGGTGAGGATTGTGAGAGGTTTACACTGAGGCTACCCGATGAAGTTCGGAATCAGATGATGATGAACACGACGACGCTTAAGCGTGCGAAAAGCTGTGTGAGTTTTACGCGAATGAGTAGTGGAAAATGTGGTTATAGGTCAAGAAGTTTTGGGTGTGGAAGTGGGAATGGTAATGTGCAGTATGAAAGGTTTGGAAGTGAGGAGGAAGAAAACTGGTTTGTCAAGAACAATTGGAGTAATAAATCCGCAAGAAAATCTCATATGAAATGTTTGAGAGTTGAAATGGACAATAATCATGGAGAGAGATCATATGACCTTTTGTGTCATGTGTAG 1143 0.4217 MQKNNHFRLLSFGHGQAWFTLLLVTSLIQLLLPVTGQPMGPEDPTENNKSVATIMGIVALMFVFSGFLSLYSARCSDRQHGVIYDLTLPNGANGVRAQNNLPSNGLNQDVINTFPTFRYSNVKGLKIGKSTLACAVCLNEFQDDETLRLIPKCSHVYHHGCIDIWLVSHNTCPVCRANLVPISDEDATEPPIISIQIPEVESHHNEQVEEVEHVVEVEQKGDIIEVEYSPKIDLLRRSKTYSAPTRSRSTGYLSSLLLSRSNSTGVLVQPGEDCERFTLRLPDEVRNQMMMNTTTLKRAKSCVSFTRMSSGKCGYRSRSFGCGSGNGNVQYERFGSEEEENWFVKNNWSNKSARKSHMKCLRVEMDNNHGERSYDLLCHV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00594 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 40 290 - -
Vifa1g00594 380 CDD RING-H2_EL5-like 134 176 - -
Vifa1g00594 380 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Vifa1g00594 380 FunFam E3 ubiquitin-protein ligase ATL6 94 182 - -
Vifa1g00594 380 Pfam Ring finger domain 133 176 IPR001841 -
Vifa1g00594 380 SMART ring_2 134 175 IPR001841 -
Vifa1g00594 380 SUPERFAMILY RING/U-box 128 182 - -
Vifa1g00594 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 181 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00594 Vifa-Chr1 100039165 100040307 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00594 37 319 Rapid Response to Elicitors AT3G05200 38.047 2.35e-48 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00594 K10664 - gmx:100814384 323.553