Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00593 ATGACCTTAGATGCAGTGGCTTTTCCATACAAAACATTAACTCACGGTTCCAAAGATTACTTGTATTCATTAGTTGAAACTGTTGCAAGTGAAGAATCTTGGAGCAACAACAACTACACTTTCCAAACAACAGCAACAGAAGAAGAAGAAGACGACCTTTATGGAATTATCAACAAGAATTTTTATTCTCCTTCTCCTTCAGTGGGGCATACTGGTAGGGATTCAAAGTCTTCCACTGAAGCTTCCAATCTTCCTTCGAACTTCGTGCTGGAAGGTGCCGCCGCGCCAATCAGTCGTAGGCGCAAACGACGTCGCACTGCTATTGCGAAAAACGAGGATGAAATCGAGAGCCAGCGGATGACTCATATTGCAGTTGAGCGTAATCGAAGAAAACAGATGAACGAGTACCTTGCTGTGCTCAGATCTATGATGCCGCGTTCTTACGCTAAAAGGGGTGATCAAGCATCAATAGTTGGAGGCGCAATCAACTTCTTAAAGGAGCTAGAGCACATTATCCAATCCATAAAAGGACAAAAGAAAATAAAAGAACAACGAGCACATGAAAATGGATTCAACGTTGAAGTGACATTGGTTGATTGCCATGCCAATATAAAGATAATGTTGAAGAAACAACATGGACATGTGATGAAGATGGTTATTGGGATTCAAAACCTTGGCCTCAATATTCTTCACCTAAATGTTTCTACTCTCGATCATTTGGTTCTTGTCTCGGTTAGCGTTAAGGTAGAGGAAGGGTGTGAACCGAAGACGGTGGATGAAATTGCAGCTGCTATGAATCAACTATCACTGAAAATCCAGGCAGAAGCTGTATTATAA 837 0.4158 MTLDAVAFPYKTLTHGSKDYLYSLVETVASEESWSNNNYTFQTTATEEEEDDLYGIINKNFYSPSPSVGHTGRDSKSSTEASNLPSNFVLEGAAAPISRRRKRRRTAIAKNEDEIESQRMTHIAVERNRRKQMNEYLAVLRSMMPRSYAKRGDQASIVGGAINFLKELEHIIQSIKGQKKIKEQRAHENGFNVEVTLVDCHANIKIMLKKQHGHVMKMVIGIQNLGLNILHLNVSTLDHLVLVSVSVKVEEGCEPKTVDEIAAAMNQLSLKIQAEAVL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00593 278 Gene3D - 111 182 IPR036638 GO:0046983
Vifa1g00593 278 SMART finulus 123 174 IPR011598 GO:0046983
Vifa1g00593 278 MobiDBLite consensus disorder prediction 65 85 - -
Vifa1g00593 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 186 IPR036638 GO:0046983
Vifa1g00593 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 168 IPR011598 GO:0046983
Vifa1g00593 278 Coils Coil 165 185 - -
Vifa1g00593 278 PANTHER MAX DIMERIZATION, MAD 189 275 - -
Vifa1g00593 278 Pfam Helix-loop-helix DNA-binding domain 118 169 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00593 Vifa-Chr1 100016375 100020827 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00593 109 249 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 50.847 4.99e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g00593 HLH 4.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00593 - - gmx:100797856 229.95