Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00591 ATGTTACTTCCGTGTTTGATGGAAATCATGGCGAGGAAGAAACAGAATAACTGTTGGATTCACGTTACAAGAGTAGCAAATGGTCTTTTGTGGAAATGCAATTATTGTGAGTTTACTTTTGAGGGTAGTACTAGTGCTTCAAAAGTTAAAGCACACTTGGGGCTGGATGGCAAAACAGGAAACGTTACACCATGCTCCCATTATCATGCTCATCAACAAGTTCTCAACAATATTGCATCCTCTTCAAGTGAGAACTTGAGCATCCGTGATAGAAGTATCTTTGAGAGTAAGATTAATAACTTAAAAGGAATGGTTATTGATCTAGAATGTGAGGAAAATGATATTGCAAAACAAACTCAATGGTTGGAGTCTCGGGGCAGAAAGCGCAAGCCTGAAGTTGATGCATGGATAAAAGAATTACATGAATTGAATCAAAGAGTGGATGCTATTAATAACTTGGATGACATGAATGAGTTGTTCAAAGATATGAAACGACACAAGGGAGAAAAACCTCTCACTTTGTCCACTGAATTTGTCGGGAAAGAATTAGACTTTAATATCAAGAAAGTGATTCAACTTCTAAATGATGACCAAGTTTTTGTTATCGGTATATATGGAATGGGAGGAGTGGGAAAAACTTTACTTGCTACTCTTGTGGAGAATGAAATAAAAAAGAAAAGAACTTTCAATGATGTGTTTTGGGTCACTGTTTCTCCCAATTTTACCATCTCAAAACTGCAATACGATATCGCAAAACGAATAGGCGTGGAGCTTGATGAAGACAATGAGAGAATTAGAGCAAACAAATTGTCGACGACGTTGGAGACAAAGGAGAAGTCTGTTCTTATTTTAGATGATGTTTGGAGATACATTGATTTGGAAAAGGTGGGTGTTTCTACAAAAGTGAATGGAATTAAAGTGATTCTCACAACGCGTTTGAAACATGTGTGTCAACAGATGGATTGCTTGCCAAGTCATATGATAAAAGTGATACCTCTCTACGATGTAGATGAAGGTTGGGAGTTATTTAAGGTAAAACTTGGACACTACGGAACACCTGCTACACTCTCCCCTGAAATTGAAACTGTTGCAAGAGATATTGTAGATCGGTTTGCGGGTTTGCCGCTTGGAATCAGTGTGATGGCTAGAACCATGAAAGGAATTGATGAGATTGATCAATGGAAACATTCATTGAATAAGCTTAACAAATTGGAAATGGGACAAGAGGTGATAGAAGAAGTTTTCAAGGTATTAAAACGTAGTTATGATAATTTGATGGAAAAAGACTTGCGAAACTGTTTTTTGTATTGTGCACTACTATCTAGTTACGAAGAGAATGACAGAGAAGAAACGATTATGAAACTTGTTGACAATGGACTGATAAATGGGAATAGGTGTTTGCAAGAAATATTCGATGAAGGGCAAACCATATTAGATAAGCTCAGATCCCACAGTTTGATGAGTGGTTTTGATCATTCATTTGAATTTAATTATCGCTTGGTGATAGACACGGCATGTTATATTATGAAAGAAAGTAAGAGAAATGCTATGGTGAAATTAGGGAACGAATTGACAAAGACAAACATCACGCATGAATGGGCCGCTGATTTAGAGTTTGTTCATATGTGGGCTGATGAATCAAATGATATTGAAGAAATTCCAGAGGGCATGTCACCTTATTGTCCGAGGTTGTCCACCTTGATTATAAATCAATTGGCCGTTCAACATATTCCAGAGAGTTTTTTCAAATGTATGAATACCCTAACAATACTCGATCTGTCATATAGTAAAAGACTAGAATGCTTGCCAAATTCTATCAGTAAGATGAAGTCTCTTGTTTCTTTAGTACTAATAGAATGTAATTCACTTAAACATGTGCCGCCATTAGGAGAATTGAAGGTATTGTCAAGATTGGTTCTTTCAAATTGTTCCATTGAAGAACTACCACAAGGTTTGGATAAGCTACAGAATTTGAAATGGCTTGATCTATCTTTCAACAAGAGTTTGAATTTTGAATTAGGGTCTTTGAATTTGACCAAAATACAATACCTTGATCTCCAAGGTACTCGTACAATGATTACTGTCGAAGATATTCAAAGAATGACTGTGTTGGAATGTTTTGGAGGTGCTTTTAACTGCAAACATTACAACCAGTACTTGGAGAAATATCTTGGCACGCGATCTCGGCTCCAAGCATATTATCTCATATTAGGAAATGTATATGGTGAATCAAGAAGTGTTTTGCGGCATGATATTTATTTGAAAGCATTTGATCCAAATGATCCTGAAGTTATGACTATACTATTTAGAGACTGTGGTCATTTCTCCCACATACTACCTAAAGATCTTACATGTTTGAATATAGATAAAAATGATCATTGGGTTTGCTTATGTGATGCTCTCTCATGTAACACTAGTTCTTCTTTGAAGAAAATTGGAGCTTATAATTGCCAACAGCTAGAGAGGTTGTTTTGTTTATCTGATTCTTGTTCCTTTTGCACCAAGATTCACAACCTTGAAATGTTGGAACTTGAGAGTTTGGAAAGGTTAACCGTGATTGACGTTAATGCAAGACAAACTTGGTCATTGGGTGGCATATTCTCTTGTCTAAAAAGTATTTATGTTTTTGAGTGCCATTTGATAGAGAAGTTAATTACACCAAAGTTAGTTGGACAAGTTCAAAATCTGGAAATAATTTCAGTAAGGCGTTGCAATTCAATGAAAGAGATATTAGCGGTGAGCGACGACATCAGACTTCCCAAGCTAAAAAGATTGATATTGGATTATTTACCACAATTGAAGATTGTATGTAAAGGGAGTATATATTGTGGATCTTTACCTCCAGAATTCACCATCTCCAACTGTCCAAGTTTAGAACGATACCCTACAATTAAAAAGTTAAAAAGAAGAAGGGAAAAGGATCCAAATCTGATTATGCCGCGCCTCATCTCACAATCCAGATCATGGTTAACATATGAAGAACTAATCCAAGCTACAAATGGGTCTTCGGAGCAGAATTTGTTGGGAGAAGCTGGATTTGGTTGTGTCTACAAAGGTTTGCTAGATGGAAGAGAAGTAGCTGTAAAACAGCTTAAAATTGATAGTGGACAAGGGGAGCGTGACTTCAGAGCTGAAGTTGAGACTATTAGTCGAGTACATCATCGTCATCTGGTTTCTTTGGTTGGTTACGGTATATTTGAGCATCAAAGATTGCTCGTCTTTGACTTTGCTCTGGTTTCAGATTTCGGGCTTGCGAAATTAGCATTGGATTCAAACACACATGTAACTACACGGATCAGAATGTTGAGGAGGATGGCTTTAATGATTCTCAAAGTAGCTATGGAAGTATGA 3351 0.3674 MLLPCLMEIMARKKQNNCWIHVTRVANGLLWKCNYCEFTFEGSTSASKVKAHLGLDGKTGNVTPCSHYHAHQQVLNNIASSSSENLSIRDRSIFESKINNLKGMVIDLECEENDIAKQTQWLESRGRKRKPEVDAWIKELHELNQRVDAINNLDDMNELFKDMKRHKGEKPLTLSTEFVGKELDFNIKKVIQLLNDDQVFVIGIYGMGGVGKTLLATLVENEIKKKRTFNDVFWVTVSPNFTISKLQYDIAKRIGVELDEDNERIRANKLSTTLETKEKSVLILDDVWRYIDLEKVGVSTKVNGIKVILTTRLKHVCQQMDCLPSHMIKVIPLYDVDEGWELFKVKLGHYGTPATLSPEIETVARDIVDRFAGLPLGISVMARTMKGIDEIDQWKHSLNKLNKLEMGQEVIEEVFKVLKRSYDNLMEKDLRNCFLYCALLSSYEENDREETIMKLVDNGLINGNRCLQEIFDEGQTILDKLRSHSLMSGFDHSFEFNYRLVIDTACYIMKESKRNAMVKLGNELTKTNITHEWAADLEFVHMWADESNDIEEIPEGMSPYCPRLSTLIINQLAVQHIPESFFKCMNTLTILDLSYSKRLECLPNSISKMKSLVSLVLIECNSLKHVPPLGELKVLSRLVLSNCSIEELPQGLDKLQNLKWLDLSFNKSLNFELGSLNLTKIQYLDLQGTRTMITVEDIQRMTVLECFGGAFNCKHYNQYLEKYLGTRSRLQAYYLILGNVYGESRSVLRHDIYLKAFDPNDPEVMTILFRDCGHFSHILPKDLTCLNIDKNDHWVCLCDALSCNTSSSLKKIGAYNCQQLERLFCLSDSCSFCTKIHNLEMLELESLERLTVIDVNARQTWSLGGIFSCLKSIYVFECHLIEKLITPKLVGQVQNLEIISVRRCNSMKEILAVSDDIRLPKLKRLILDYLPQLKIVCKGSIYCGSLPPEFTISNCPSLERYPTIKKLKRRREKDPNLIMPRLISQSRSWLTYEELIQATNGSSEQNLLGEAGFGCVYKGLLDGREVAVKQLKIDSGQGERDFRAEVETISRVHHRHLVSLVGYGIFEHQRLLVFDFALVSDFGLAKLALDSNTHVTTRIRMLRRMALMILKVAMEV 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00591 1116 Coils Coil 133 153 - -
Vifa1g00591 1116 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 979 1076 - -
Vifa1g00591 1116 ProSiteProfiles Protein kinase domain profile. 1002 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00591 1116 Gene3D Phosphorylase Kinase; domain 1 983 1076 - -
Vifa1g00591 1116 Gene3D Ribonuclease Inhibitor 525 734 IPR032675 -
Vifa1g00591 1116 SUPERFAMILY Protein kinase-like (PK-like) 976 1083 IPR011009 -
Vifa1g00591 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 437 IPR027417 -
Vifa1g00591 1116 Pfam NB-ARC domain 187 424 IPR002182 GO:0043531
Vifa1g00591 1116 Pfam Protein tyrosine and serine/threonine kinase 1006 1079 IPR001245 GO:0004672|GO:0006468
Vifa1g00591 1116 Gene3D Ribonuclease Inhibitor 783 974 IPR032675 -
Vifa1g00591 1116 PRINTS Disease resistance protein signature 274 288 - -
Vifa1g00591 1116 PRINTS Disease resistance protein signature 653 669 - -
Vifa1g00591 1116 PRINTS Disease resistance protein signature 201 216 - -
Vifa1g00591 1116 PRINTS Disease resistance protein signature 371 385 - -
Vifa1g00591 1116 ProSiteProfiles Zinc finger BED-type profile. 13 78 IPR003656 GO:0003677
Vifa1g00591 1116 FunFam Probable disease resistance protein At1g61300 164 323 - -
Vifa1g00591 1116 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 119 962 - -
Vifa1g00591 1116 SUPERFAMILY L domain-like 529 966 - -
Vifa1g00591 1116 Gene3D - 335 426 IPR042197 -
Vifa1g00591 1116 Gene3D - 155 328 IPR027417 -
Vifa1g00591 1116 SMART AAA_5 198 333 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00591 Vifa-Chr1 99936899 99941168 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00591 982 1076 Trihelix Transcription Factor Family AT5G38560 70.833 2.60e-36 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vifa1g00591 NB-ARC 5.8e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00591 - - mtr:25497664 1077.77