Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00590 ATGTCAATACCAGAGTTAGCTTCTGAAGATTCTGAAGATGAGTCAGAAGGAGATTCTGACAGTGGATCTGATTTTGATCCAGATGCTGATGATGATCCAAAATCTGGTGGTGACCATAGTTCTGGAAGGGAAAAATTTGTAGGTGGTAACTCTGAAGAGAGGATAACTCATATTGCAGTTGAGCGTAATCGAAGAAAACAGATGAATGAGTACCTTGTTGTGCTCAGATCCTTGATGCCTCGTTCTTATGTAAAAAGGGATGATCAAGCATCAATAGTTGGAGGCGCAATCAACTTCTTAAAAGAACTAGAGCATATTATCCAATCCATAAAAGGACAAAAGAAAACAATAGAACAACAATCACATGAAAATGGATTCAATAATAGCTCATCATCACCCTTTGCTGATTTTTTCATGTTCCCTCAATACTCCACGTGTGCACCTCAGAGCAACACGTGCTACCCTGCTAACCCTAATCAGTCACGTGCCATGGCAGACGTTGAAGTGACATTGGTTGATAGCCATGTCAATATAAAGATAATGTTGAAGAAACAACATGAACATGTGACGAAGATGGTTGTTGGGATTCAAAACCTTGACCTCAATATTCTTCACCTCAATGTTTCTACTCTCGATCATTTGGTTCTTGTCTCGGTTAGTGTCAAAGTAGAGGAAGGGTGTGAACTGAAGACGGTGGATGAAATTGCAGCTGCTATGAATCAACTATCACTGAAAATCCAGGCAGAAGCTGTATTATAA 759 0.3979 MSIPELASEDSEDESEGDSDSGSDFDPDADDDPKSGGDHSSGREKFVGGNSEERITHIAVERNRRKQMNEYLVVLRSLMPRSYVKRDDQASIVGGAINFLKELEHIIQSIKGQKKTIEQQSHENGFNNSSSSPFADFFMFPQYSTCAPQSNTCYPANPNQSRAMADVEVTLVDSHVNIKIMLKKQHEHVTKMVVGIQNLDLNILHLNVSTLDHLVLVSVSVKVEEGCELKTVDEIAAAMNQLSLKIQAEAVL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00590 252 MobiDBLite consensus disorder prediction 7 27 - -
Vifa1g00590 252 Pfam Helix-loop-helix DNA-binding domain 54 104 IPR011598 GO:0046983
Vifa1g00590 252 MobiDBLite consensus disorder prediction 1 54 - -
Vifa1g00590 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 103 IPR011598 GO:0046983
Vifa1g00590 252 Coils Coil 100 120 - -
Vifa1g00590 252 MobiDBLite consensus disorder prediction 28 54 - -
Vifa1g00590 252 SMART finulus 58 109 IPR011598 GO:0046983
Vifa1g00590 252 PANTHER MAX DIMERIZATION, MAD 40 249 - -
Vifa1g00590 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 123 IPR036638 GO:0046983
Vifa1g00590 252 Gene3D - 51 126 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00590 Vifa-Chr1 99802860 99806559 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00590 53 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 53.977 1.55e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g00590 HLH 4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00590 - - ccaj:109795426 236.498